Analysis of interatomic Contacts of Structural Units in PDB entry:
3LVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LVM entry

There are 2 chains in PDB entry 3LVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 398
B
 TYR -5GLY 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 3LVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 24Right-handed alpha
Helix 2
2
A
41 63Right-handed alpha
Helix 3
3
A
65 67Right-handed 310
Helix 4
4
A
74 91Right-handed alpha
Helix 5
5
A
104 117Right-handed alpha
Helix 6
6
A
133 141Right-handed alpha
Helix 7
7
A
162 174Right-handed alpha
Helix 8
8
A
245 282Right-handed alpha
Helix 9
9
A
309 317Right-handed alpha
Helix 10
10
A
336 343Right-handed alpha
Helix 11
11
A
345 351Right-handed alpha
Helix 12
12
A
362 382Right-handed alpha
Helix 13
13
A
384 390Right-handed alpha
Helix 14
14
B
-5 0Right-handed alpha
Helix 15
15
B
16 25Right-handed alpha
Helix 16
16
B
41 63Right-handed alpha
Helix 17
17
B
65 67Right-handed 310
Helix 18
18
B
74 90Right-handed alpha
Helix 19
19
B
104 117Right-handed alpha
Helix 20
20
B
133 141Right-handed alpha
Helix 21
21
B
162 173Right-handed alpha
Helix 22
22
B
245 282Right-handed alpha
Helix 23
23
B
309 317Right-handed alpha
Helix 24
24
B
336 342Right-handed alpha
Helix 25
25
B
345 351Right-handed alpha
Helix 26
26
B
362 382Right-handed alpha
Helix 27
27
B
384 389Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3LVM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
320 321parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
214 218anti-parallel
Strand 3
A
199 203anti-parallel
Strand 4
A
176 180parallel
Strand 5
A
145 149parallel
Strand 6
A
96 100parallel
Strand 7
A
120 124parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 290first strand
Strand 2
A
300 305anti-parallel
Strand 3
A
352 356anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
320 321parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 72first strand
Strand 2
B
214 218anti-parallel
Strand 3
B
199 203anti-parallel
Strand 4
B
176 180parallel
Strand 5
B
145 149parallel
Strand 6
B
96 100parallel
Strand 7
B
120 124parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 290first strand
Strand 2
B
300 305anti-parallel
Strand 3
B
352 356anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il