Analysis of interatomic Contacts of Structural Units in PDB entry:
3LVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LVP entry

There are 4 chains in PDB entry 3LVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 989LYS 1286
B
 VAL 986ASN 1285
C
 TYR 987LYS 1286
D
 VAL 986ASN 1285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 54 helices in PDB entry 3LVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
995 997Right-handed 310
Helix 2
2
A
1043 1057Right-handed alpha
Helix 3
3
A
1086 1095Right-handed alpha
Helix 4
4
A
1096 1099Right-handed 310
Helix 5
5
A
1108 1129Right-handed alpha
Helix 6
6
A
1137 1139Right-handed 310
Helix 7
7
A
1175 1179Right-handed 310
Helix 8
8
A
1180 1187Right-handed alpha
Helix 9
9
A
1190 1207Right-handed alpha
Helix 10
10
A
1217 1227Right-handed alpha
Helix 11
11
A
1238 1249Right-handed alpha
Helix 12
12
A
1258 1267Right-handed alpha
Helix 13
13
A
1268 1270Right-handed 310
Helix 14
14
A
1271 1272Right-handed 310
Helix 15
15
A
1273 1278Right-handed alpha
Helix 16
16
B
995 999Right-handed 310
Helix 17
17
B
1040 1055Right-handed alpha
Helix 18
18
B
1086 1094Right-handed alpha
Helix 19
19
B
1108 1129Right-handed alpha
Helix 20
20
B
1137 1139Right-handed 310
Helix 21
21
B
1175 1179Right-handed 310
Helix 22
22
B
1180 1186Right-handed alpha
Helix 23
23
B
1190 1207Right-handed alpha
Helix 24
24
B
1217 1227Right-handed alpha
Helix 25
25
B
1238 1249Right-handed alpha
Helix 26
26
B
1252 1256Right-handed 310
Helix 27
27
B
1258 1267Right-handed alpha
Helix 28
28
B
1273 1278Right-handed alpha
Helix 29
29
C
1040 1056Right-handed alpha
Helix 30
30
C
1086 1094Right-handed alpha
Helix 31
31
C
1108 1129Right-handed alpha
Helix 32
32
C
1137 1139Right-handed 310
Helix 33
33
C
1180 1186Right-handed alpha
Helix 34
34
C
1190 1207Right-handed alpha
Helix 35
35
C
1217 1227Right-handed alpha
Helix 36
36
C
1238 1249Right-handed alpha
Helix 37
37
C
1252 1256Right-handed 310
Helix 38
38
C
1258 1266Right-handed alpha
Helix 39
39
C
1267 1270Right-handed 310
Helix 40
40
C
1271 1272Right-handed 310
Helix 41
41
C
1273 1278Right-handed alpha
Helix 42
42
C
1279 1282Right-handed 310
Helix 43
43
D
1046 1054Right-handed alpha
Helix 44
44
D
1086 1094Right-handed alpha
Helix 45
45
D
1108 1129Right-handed alpha
Helix 46
46
D
1137 1139Right-handed 310
Helix 47
47
D
1175 1179Right-handed 310
Helix 48
48
D
1180 1187Right-handed alpha
Helix 49
49
D
1190 1207Right-handed alpha
Helix 50
50
D
1217 1228Right-handed alpha
Helix 51
51
D
1238 1249Right-handed alpha
Helix 52
52
D
1252 1256Right-handed 310
Helix 53
53
D
1258 1267Right-handed alpha
Helix 54
54
D
1273 1278Right-handed alpha
Back to top of page

There are 14 sheets in PDB entry 3LVP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
999 1006first strand
Strand 2
A
1013 1022anti-parallel
Strand 3
A
1025 1033anti-parallel
Strand 4
A
1076 1080anti-parallel
Strand 5
A
1065 1069anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1131 1132first strand
Strand 2
A
1158 1159anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1141 1143first strand
Strand 2
A
1149 1151anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1004 1007first strand
Strand 2
B
1012 1022anti-parallel
Strand 3
B
1025 1034anti-parallel
Strand 4
B
1076 1080anti-parallel
Strand 5
B
1065 1069anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1131 1132first strand
Strand 2
B
1158 1159anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1141 1143first strand
Strand 2
B
1149 1151anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
999 1007first strand
Strand 2
C
1012 1019anti-parallel
Strand 3
C
1027 1034anti-parallel
Strand 4
C
1076 1080anti-parallel
Strand 5
C
1065 1069anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1131 1132first strand
Strand 2
C
1158 1159anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1141 1143first strand
Strand 2
C
1149 1151anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1166 1167first strand
Strand 2
C
1188 1189anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
999 1006first strand
Strand 2
D
1013 1018anti-parallel
Strand 3
D
1029 1033anti-parallel
Strand 4
D
1077 1080anti-parallel
Strand 5
D
1065 1068anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1131 1132first strand
Strand 2
D
1158 1159anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1141 1143first strand
Strand 2
D
1149 1151anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1166 1167first strand
Strand 2
D
1188 1189anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il