Analysis of interatomic Contacts of Structural Units in PDB entry:
3LVT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LVT entry

There is 1 chain in PDB entry 3LVT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0GLU 895
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3LVT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 43Right-handed alpha
Helix 2
2
A
55 65Right-handed alpha
Helix 3
3
A
68 78Right-handed alpha
Helix 4
4
A
91 95Right-handed 310
Helix 5
5
A
96 115Right-handed alpha
Helix 6
6
A
132 139Right-handed alpha
Helix 7
7
A
200 219Right-handed alpha
Helix 8
8
A
238 250Right-handed alpha
Helix 9
9
A
259 270Right-handed alpha
Helix 10
10
A
294 299Right-handed 310
Helix 11
11
A
300 316Right-handed alpha
Helix 12
12
A
317 330Right-handed alpha
Helix 13
13
A
333 346Right-handed alpha
Helix 14
14
A
358 390Right-handed alpha
Helix 15
15
A
429 431Right-handed 310
Helix 16
16
A
432 443Right-handed alpha
Helix 17
17
A
615 623Right-handed alpha
Helix 18
18
A
626 630Right-handed 310
Helix 19
19
A
762 767Right-handed 310
Helix 20
20
A
782 784Right-handed 310
Helix 21
21
A
785 797Right-handed alpha
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There are 11 sheets in PDB entry 3LVT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 230first strand
Strand 2
A
4 12parallel
Strand 3
A
253 257parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
81 82parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 123first strand
Strand 2
A
144 147parallel
Strand 3
A
181 186parallel
Strand 4
A
171 175anti-parallel
Strand 5
A
277 279parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 458first strand
Strand 2
A
448 451anti-parallel
Strand 3
A
500 508anti-parallel
Strand 4
A
401 407anti-parallel
Strand 5
A
801 804anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 458first strand
Strand 2
A
448 451anti-parallel
Strand 3
A
500 508anti-parallel
Strand 4
A
815 817anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 427first strand
Strand 2
A
481 496anti-parallel
Strand 3
A
461 471anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 521first strand
Strand 2
A
526 528anti-parallel
Strand 3
A
532 536anti-parallel
Strand 4
A
542 546anti-parallel
Strand 5
A
552 556anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 581first strand
Strand 2
A
558 563anti-parallel
Strand 3
A
669 675anti-parallel
Strand 4
A
743 750anti-parallel
Strand 5
A
734 737anti-parallel
Strand 6
A
710 711anti-parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
588 594first strand
Strand 2
A
598 610anti-parallel
Strand 3
A
638 650anti-parallel
Strand 4
A
656 664anti-parallel
Strand 5
A
769 780anti-parallel
Strand 6
A
724 729anti-parallel
Strand 7
A
715 719anti-parallel
Strand 8
A
683 687anti-parallel
Strand 9
A
692 696anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
819 820first strand
Strand 2
A
857 858anti-parallel
Strand 3
A
861 862anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
826 833first strand
Strand 2
A
840 846anti-parallel
Strand 3
A
889 894anti-parallel
Strand 4
A
865 867anti-parallel
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