Analysis of interatomic Contacts of Structural Units in PDB entry:
3LVU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LVU entry

There are 4 chains in PDB entry 3LVU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 311ARG 568
B
 ASN 312ARG 568
C
 SER 311ARG 568
D
 SER 311ARG 568
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 3LVU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
329 340Right-handed alpha
Helix 2
2
A
341 351Right-handed alpha
Helix 3
3
A
374 382Right-handed alpha
Helix 4
4
A
383 388Right-handed 310
Helix 5
5
A
407 421Right-handed alpha
Helix 6
6
A
448 464Right-handed alpha
Helix 7
7
A
475 485Right-handed alpha
Helix 8
8
A
504 510Right-handed alpha
Helix 9
9
A
510 515Right-handed alpha
Helix 10
10
A
527 540Right-handed alpha
Helix 11
11
A
542 560Right-handed alpha
Helix 12
12
B
329 340Right-handed alpha
Helix 13
13
B
341 351Right-handed alpha
Helix 14
14
B
374 382Right-handed alpha
Helix 15
15
B
383 385Right-handed 310
Helix 16
16
B
391 396Right-handed alpha
Helix 17
17
B
407 421Right-handed alpha
Helix 18
18
B
448 465Right-handed alpha
Helix 19
19
B
475 485Right-handed alpha
Helix 20
20
B
503 510Right-handed alpha
Helix 21
21
B
511 514Right-handed 310
Helix 22
22
B
527 540Right-handed alpha
Helix 23
23
B
542 560Right-handed alpha
Helix 24
24
C
329 340Right-handed alpha
Helix 25
25
C
341 351Right-handed alpha
Helix 26
26
C
374 382Right-handed alpha
Helix 27
27
C
383 388Right-handed 310
Helix 28
28
C
391 396Right-handed alpha
Helix 29
29
C
407 421Right-handed alpha
Helix 30
30
C
448 465Right-handed alpha
Helix 31
31
C
475 485Right-handed alpha
Helix 32
32
C
503 510Right-handed alpha
Helix 33
33
C
510 515Right-handed alpha
Helix 34
34
C
527 540Right-handed alpha
Helix 35
35
C
542 560Right-handed alpha
Helix 36
36
D
329 340Right-handed alpha
Helix 37
37
D
341 351Right-handed alpha
Helix 38
38
D
374 382Right-handed alpha
Helix 39
39
D
383 388Right-handed 310
Helix 40
40
D
407 421Right-handed alpha
Helix 41
41
D
448 465Right-handed alpha
Helix 42
42
D
475 485Right-handed alpha
Helix 43
43
D
504 510Right-handed alpha
Helix 44
44
D
510 515Right-handed alpha
Helix 45
45
D
527 540Right-handed alpha
Helix 46
46
D
542 560Right-handed alpha
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There are 12 sheets in PDB entry 3LVU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
490 496first strand
Strand 2
A
314 320anti-parallel
Strand 3
A
563 565anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 426first strand
Strand 2
A
429 431anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 445first strand
Strand 2
A
470 474parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
490 497first strand
Strand 2
B
313 320anti-parallel
Strand 3
B
563 565anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
424 426first strand
Strand 2
B
429 431anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
441 445first strand
Strand 2
B
470 474parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
490 497first strand
Strand 2
C
313 320anti-parallel
Strand 3
C
563 565anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
424 426first strand
Strand 2
C
429 431anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
439 445first strand
Strand 2
C
468 474parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
490 496first strand
Strand 2
D
314 320anti-parallel
Strand 3
D
563 565anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
424 426first strand
Strand 2
D
429 431anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
441 445first strand
Strand 2
D
470 474parallel
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