Analysis of interatomic Contacts of Structural Units in PDB entry:
3LW8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LW8 entry

There are 8 chains in PDB entry 3LW8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -3ALA 181
B
 GLY -3ALA 181
C
 GLY -3ALA 181
D
 SER 1ALA 181
E
 ASN 8PHE 188
F
 ASN 8PHE 188
G
 ASN 8PHE 188
H
 ASN 8PHE 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 3LW8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-1 3Right-handed 310
Helix 2
2
A
17 28Right-handed alpha
Helix 3
3
A
63 67Right-handed 310
Helix 4
4
A
69 74Right-handed 310
Helix 5
5
A
88 98Right-handed alpha
Helix 6
6
A
98 107Right-handed alpha
Helix 7
7
A
118 122Right-handed 310
Helix 8
8
A
124 134Right-handed alpha
Helix 9
9
A
140 152Right-handed alpha
Helix 10
10
A
166 180Right-handed alpha
Helix 11
11
B
17 28Right-handed alpha
Helix 12
12
B
63 67Right-handed 310
Helix 13
13
B
69 74Right-handed 310
Helix 14
14
B
88 98Right-handed alpha
Helix 15
15
B
98 107Right-handed alpha
Helix 16
16
B
118 122Right-handed 310
Helix 17
17
B
124 133Right-handed alpha
Helix 18
18
B
140 151Right-handed alpha
Helix 19
19
B
166 181Right-handed alpha
Helix 20
20
C
-1 3Right-handed 310
Helix 21
21
C
17 28Right-handed alpha
Helix 22
22
C
63 67Right-handed 310
Helix 23
23
C
69 74Right-handed 310
Helix 24
24
C
88 98Right-handed alpha
Helix 25
25
C
98 107Right-handed alpha
Helix 26
26
C
118 122Right-handed 310
Helix 27
27
C
124 134Right-handed alpha
Helix 28
28
C
140 152Right-handed alpha
Helix 29
29
C
166 180Right-handed alpha
Helix 30
30
D
17 28Right-handed alpha
Helix 31
31
D
63 67Right-handed 310
Helix 32
32
D
69 74Right-handed 310
Helix 33
33
D
88 98Right-handed alpha
Helix 34
34
D
98 107Right-handed alpha
Helix 35
35
D
118 122Right-handed 310
Helix 36
36
D
124 133Right-handed alpha
Helix 37
37
D
140 151Right-handed alpha
Helix 38
38
D
166 180Right-handed alpha
Helix 39
39
E
40 55Right-handed alpha
Helix 40
40
E
58 86Right-handed alpha
Helix 41
41
E
91 107Right-handed alpha
Helix 42
42
E
117 126Right-handed alpha
Helix 43
43
E
126 137Right-handed alpha
Helix 44
44
E
141 165Right-handed alpha
Helix 45
45
E
169 183Right-handed alpha
Helix 46
46
F
40 54Right-handed alpha
Helix 47
47
F
58 86Right-handed alpha
Helix 48
48
F
91 107Right-handed alpha
Helix 49
49
F
117 125Right-handed alpha
Helix 50
50
F
126 137Right-handed alpha
Helix 51
51
F
141 165Right-handed alpha
Helix 52
52
F
169 183Right-handed alpha
Helix 53
53
G
40 55Right-handed alpha
Helix 54
54
G
58 87Right-handed alpha
Helix 55
55
G
91 107Right-handed alpha
Helix 56
56
G
117 126Right-handed alpha
Helix 57
57
G
126 138Right-handed alpha
Helix 58
58
G
141 165Right-handed alpha
Helix 59
59
G
169 183Right-handed alpha
Helix 60
60
H
40 56Right-handed alpha
Helix 61
61
H
59 86Right-handed alpha
Helix 62
62
H
91 107Right-handed alpha
Helix 63
63
H
117 125Right-handed alpha
Helix 64
64
H
126 137Right-handed alpha
Helix 65
65
H
141 165Right-handed alpha
Helix 66
66
H
169 183Right-handed alpha
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There are 8 sheets in PDB entry 3LW8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 48first strand
Strand 2
A
51 58anti-parallel
Strand 3
A
5 12parallel
Strand 4
A
79 85parallel
Strand 5
A
112 117parallel
Strand 6
A
155 158parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 48first strand
Strand 2
B
51 58anti-parallel
Strand 3
B
4 12parallel
Strand 4
B
79 85parallel
Strand 5
B
112 117parallel
Strand 6
B
155 158parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 48first strand
Strand 2
C
51 58anti-parallel
Strand 3
C
5 12parallel
Strand 4
C
79 85parallel
Strand 5
C
112 117parallel
Strand 6
C
155 158parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
42 48first strand
Strand 2
D
51 58anti-parallel
Strand 3
D
5 12parallel
Strand 4
D
79 85parallel
Strand 5
D
112 117parallel
Strand 6
D
155 158parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 17first strand
Strand 2
E
23 31anti-parallel
Strand 3
E
34 39anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 17first strand
Strand 2
F
23 31anti-parallel
Strand 3
F
34 39anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
9 17first strand
Strand 2
G
23 31anti-parallel
Strand 3
G
34 39anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
9 17first strand
Strand 2
H
23 31anti-parallel
Strand 3
H
34 39anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il