Analysis of interatomic Contacts of Structural Units in PDB entry:
3LW9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LW9 entry

There are 2 chains in PDB entry 3LW9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 358HIS 523
B
 THR 359THR 525
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3LW9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
370 377Right-handed alpha
Helix 2
2
A
378 392Right-handed alpha
Helix 3
3
A
437 442Right-handed alpha
Helix 4
4
A
460 469Right-handed alpha
Helix 5
5
A
477 509Right-handed alpha
Helix 6
6
A
512 523Right-handed alpha
Helix 7
7
B
367 369Right-handed 310
Helix 8
8
B
370 377Right-handed alpha
Helix 9
9
B
378 392Right-handed alpha
Helix 10
10
B
437 442Right-handed alpha
Helix 11
11
B
460 469Right-handed alpha
Helix 12
12
B
477 509Right-handed alpha
Helix 13
13
B
512 524Right-handed alpha
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There are 4 sheets in PDB entry 3LW9. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 402first strand
Strand 2
A
362 366parallel
Strand 3
A
410 415anti-parallel
Strand 4
A
418 424anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 451first strand
Strand 2
A
454 459anti-parallel
Strand 3
A
430 432anti-parallel
Strand 4
A
474 476anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 402first strand
Strand 2
B
362 366parallel
Strand 3
B
410 415anti-parallel
Strand 4
B
418 424anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
447 450first strand
Strand 2
B
455 459anti-parallel
Strand 3
B
430 432anti-parallel
Strand 4
B
474 476anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il