Analysis of interatomic Contacts of Structural Units in PDB entry:
3LWB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LWB entry

There are 2 chains in PDB entry 3LWB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 7ARG 368
B
 ARG 10HIS 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3LWB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 38Right-handed alpha
Helix 2
2
A
102 109Right-handed alpha
Helix 3
3
A
125 135Right-handed alpha
Helix 4
4
A
142 151Right-handed alpha
Helix 5
5
A
151 162Right-handed alpha
Helix 6
6
A
180 188Right-handed alpha
Helix 7
7
A
209 211Right-handed 310
Helix 8
8
A
212 222Right-handed alpha
Helix 9
9
A
272 278Right-handed alpha
Helix 10
10
A
291 309Right-handed alpha
Helix 11
11
A
341 350Right-handed alpha
Helix 12
12
A
353 368Right-handed alpha
Helix 13
13
B
25 38Right-handed alpha
Helix 14
14
B
126 133Right-handed alpha
Helix 15
15
B
142 151Right-handed alpha
Helix 16
16
B
151 162Right-handed alpha
Helix 17
17
B
180 188Right-handed alpha
Helix 18
18
B
209 211Right-handed 310
Helix 19
19
B
212 222Right-handed alpha
Helix 20
20
B
272 279Right-handed alpha
Helix 21
21
B
291 309Right-handed alpha
Helix 22
22
B
341 349Right-handed alpha
Helix 23
23
B
353 369Right-handed alpha
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There are 9 sheets in PDB entry 3LWB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
43 50anti-parallel
Strand 3
A
11 18parallel
Strand 4
A
112 115parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
122 123anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 172first strand
Strand 2
A
227 231anti-parallel
Strand 3
A
191 195anti-parallel
Strand 4
A
205 207anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 252first strand
Strand 2
A
234 244anti-parallel
Strand 3
A
256 259anti-parallel
Strand 4
A
283 285anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 268first strand
Strand 2
A
234 244anti-parallel
Strand 3
A
314 322anti-parallel
Strand 4
A
325 332anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 48first strand
Strand 2
B
11 16parallel
Strand 3
B
112 115parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 172first strand
Strand 2
B
227 231anti-parallel
Strand 3
B
191 195anti-parallel
Strand 4
B
205 207anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 252first strand
Strand 2
B
234 244anti-parallel
Strand 3
B
256 259anti-parallel
Strand 4
B
283 285anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 268first strand
Strand 2
B
234 244anti-parallel
Strand 3
B
314 322anti-parallel
Strand 4
B
325 332anti-parallel
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