Analysis of interatomic Contacts of Structural Units in PDB entry:
3LWT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LWT entry

There is 1 chain in PDB entry 3LWT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 SER 0GLY 456
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3LWT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
42 46Right-handed 310
Helix 2
2
X
105 122Right-handed alpha
Helix 3
3
X
135 143Right-handed alpha
Helix 4
4
X
147 151Right-handed 310
Helix 5
5
X
159 161Right-handed 310
Helix 6
6
X
162 170Right-handed alpha
Helix 7
7
X
172 179Right-handed 310
Helix 8
8
X
278 297Right-handed alpha
Helix 9
9
X
312 326Right-handed alpha
Helix 10
10
X
343 360Right-handed alpha
Helix 11
11
X
395 418Right-handed alpha
Helix 12
12
X
426 429Right-handed 310
Helix 13
13
X
430 449Right-handed alpha
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There are 4 sheets in PDB entry 3LWT. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
38 41first strand
Strand 2
X
28 32anti-parallel
Strand 3
X
13 18anti-parallel
Strand 4
X
5 10anti-parallel
Strand 5
X
53 55anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
57 64first strand
Strand 2
X
67 82anti-parallel
Strand 3
X
85 97anti-parallel
Strand 4
X
125 126anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
186 194first strand
Strand 2
X
197 207anti-parallel
Strand 3
X
230 240anti-parallel
Strand 4
X
247 257anti-parallel
Strand 5
X
386 391parallel
Strand 6
X
298 304parallel
Strand 7
X
330 335parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
186 194first strand
Strand 2
X
197 207anti-parallel
Strand 3
X
230 240anti-parallel
Strand 4
X
247 257anti-parallel
Strand 5
X
367 371anti-parallel
Strand 6
X
377 382anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il