Analysis of interatomic Contacts of Structural Units in PDB entry:
3LXI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LXI entry

There are 2 chains in PDB entry 3LXI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 10GLN 417
B
 LYS 11GLN 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 3LXI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 25Right-handed 310
Helix 2
2
A
35 38Right-handed 310
Helix 3
3
A
39 48Right-handed alpha
Helix 4
4
A
69 79Right-handed alpha
Helix 5
5
A
91 98Right-handed alpha
Helix 6
6
A
109 122Right-handed alpha
Helix 7
7
A
122 128Right-handed alpha
Helix 8
8
A
129 143Right-handed alpha
Helix 9
9
A
152 156Right-handed alpha
Helix 10
10
A
159 169Right-handed alpha
Helix 11
11
A
172 174Right-handed 310
Helix 12
12
A
175 188Right-handed alpha
Helix 13
13
A
193 220Right-handed alpha
Helix 14
14
A
226 233Right-handed alpha
Helix 15
15
A
242 259Right-handed alpha
Helix 16
16
A
259 273Right-handed alpha
Helix 17
17
A
275 285Right-handed alpha
Helix 18
18
A
285 300Right-handed alpha
Helix 19
19
A
330 335Right-handed alpha
Helix 20
20
A
360 364Right-handed 310
Helix 21
21
A
367 386Right-handed alpha
Helix 22
22
B
21 25Right-handed 310
Helix 23
23
B
35 38Right-handed 310
Helix 24
24
B
39 48Right-handed alpha
Helix 25
25
B
69 78Right-handed alpha
Helix 26
26
B
91 98Right-handed alpha
Helix 27
27
B
109 122Right-handed alpha
Helix 28
28
B
122 128Right-handed alpha
Helix 29
29
B
129 146Right-handed alpha
Helix 30
30
B
152 156Right-handed alpha
Helix 31
31
B
159 169Right-handed alpha
Helix 32
32
B
172 174Right-handed 310
Helix 33
33
B
175 188Right-handed alpha
Helix 34
34
B
193 220Right-handed alpha
Helix 35
35
B
226 233Right-handed alpha
Helix 36
36
B
242 275Right-handed alpha
Helix 37
37
B
275 285Right-handed alpha
Helix 38
38
B
285 300Right-handed alpha
Helix 39
39
B
330 335Right-handed alpha
Helix 40
40
B
360 364Right-handed 310
Helix 41
41
B
367 386Right-handed alpha
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There are 8 sheets in PDB entry 3LXI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
64 67anti-parallel
Strand 3
A
325 329parallel
Strand 4
A
304 309anti-parallel
Strand 5
A
83 84anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
411 413anti-parallel
Strand 3
A
390 391anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 315first strand
Strand 2
A
318 320anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 400first strand
Strand 2
A
406 408anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 58first strand
Strand 2
B
64 67anti-parallel
Strand 3
B
325 329parallel
Strand 4
B
304 309anti-parallel
Strand 5
B
83 84anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 151first strand
Strand 2
B
411 413anti-parallel
Strand 3
B
390 391anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 315first strand
Strand 2
B
318 320anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
398 400first strand
Strand 2
B
406 408anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il