Analysis of interatomic Contacts of Structural Units in PDB entry:
3LXM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LXM entry

There are 3 chains in PDB entry 3LXM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ALA 310
B
 ALA 2LEU 309
C
 ASN 3GLU 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 3LXM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 16Right-handed 310
Helix 2
2
A
17 34Right-handed alpha
Helix 3
3
A
53 67Right-handed alpha
Helix 4
4
A
88 100Right-handed alpha
Helix 5
5
A
111 117Right-handed alpha
Helix 6
6
A
135 151Right-handed alpha
Helix 7
7
A
167 178Right-handed alpha
Helix 8
8
A
190 194Right-handed 310
Helix 9
9
A
196 206Right-handed alpha
Helix 10
10
A
215 223Right-handed 310
Helix 11
11
A
241 249Right-handed alpha
Helix 12
12
A
251 256Right-handed 310
Helix 13
13
A
275 281Right-handed 310
Helix 14
14
A
285 306Right-handed alpha
Helix 15
15
B
12 16Right-handed 310
Helix 16
16
B
17 34Right-handed alpha
Helix 17
17
B
53 67Right-handed alpha
Helix 18
18
B
88 97Right-handed alpha
Helix 19
19
B
111 120Right-handed alpha
Helix 20
20
B
135 151Right-handed alpha
Helix 21
21
B
167 178Right-handed alpha
Helix 22
22
B
190 194Right-handed 310
Helix 23
23
B
196 206Right-handed alpha
Helix 24
24
B
216 223Right-handed 310
Helix 25
25
B
251 256Right-handed 310
Helix 26
26
B
275 281Right-handed 310
Helix 27
27
B
285 306Right-handed alpha
Helix 28
28
C
12 16Right-handed 310
Helix 29
29
C
17 34Right-handed alpha
Helix 30
30
C
53 67Right-handed alpha
Helix 31
31
C
88 100Right-handed alpha
Helix 32
32
C
111 120Right-handed alpha
Helix 33
33
C
137 151Right-handed alpha
Helix 34
34
C
167 178Right-handed alpha
Helix 35
35
C
190 194Right-handed 310
Helix 36
36
C
196 206Right-handed alpha
Helix 37
37
C
219 223Right-handed 310
Helix 38
38
C
251 256Right-handed 310
Helix 39
39
C
276 281Right-handed alpha
Helix 40
40
C
285 292Right-handed alpha
Helix 41
41
C
292 306Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3LXM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 74first strand
Strand 2
A
44 49parallel
Strand 3
A
102 106parallel
Strand 4
A
125 127parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 212first strand
Strand 2
A
184 188parallel
Strand 3
A
157 161parallel
Strand 4
A
225 228parallel
Strand 5
A
263 265parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 74first strand
Strand 2
B
44 49parallel
Strand 3
B
102 107parallel
Strand 4
B
125 130parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 213first strand
Strand 2
B
184 188parallel
Strand 3
B
157 161parallel
Strand 4
B
225 228parallel
Strand 5
B
263 265parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 74first strand
Strand 2
C
44 49parallel
Strand 3
C
102 107parallel
Strand 4
C
125 130parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
210 213first strand
Strand 2
C
184 188parallel
Strand 3
C
157 161parallel
Strand 4
C
225 228parallel
Strand 5
C
263 265parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il