Analysis of interatomic Contacts of Structural Units in PDB entry:
3LY0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LY0 entry

There are 2 chains in PDB entry 3LY0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3TRP 353
B
 ASP 3GLY 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3LY0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 21Right-handed alpha
Helix 2
2
A
24 31Right-handed alpha
Helix 3
3
A
39 47Right-handed alpha
Helix 4
4
A
65 74Right-handed alpha
Helix 5
5
A
86 108Right-handed alpha
Helix 6
6
A
117 128Right-handed alpha
Helix 7
7
A
146 156Right-handed alpha
Helix 8
8
A
189 203Right-handed alpha
Helix 9
9
A
212 223Right-handed alpha
Helix 10
10
A
245 255Right-handed alpha
Helix 11
11
A
264 269Right-handed alpha
Helix 12
12
A
280 295Right-handed alpha
Helix 13
13
A
316 318Right-handed 310
Helix 14
14
A
319 331Right-handed alpha
Helix 15
15
A
333 342Right-handed alpha
Helix 16
16
A
342 353Right-handed alpha
Helix 17
17
B
13 21Right-handed alpha
Helix 18
18
B
24 31Right-handed alpha
Helix 19
19
B
39 47Right-handed alpha
Helix 20
20
B
65 73Right-handed alpha
Helix 21
21
B
86 109Right-handed alpha
Helix 22
22
B
117 128Right-handed alpha
Helix 23
23
B
146 156Right-handed alpha
Helix 24
24
B
189 203Right-handed alpha
Helix 25
25
B
212 223Right-handed alpha
Helix 26
26
B
245 255Right-handed alpha
Helix 27
27
B
264 269Right-handed alpha
Helix 28
28
B
280 295Right-handed alpha
Helix 29
29
B
316 318Right-handed 310
Helix 30
30
B
319 330Right-handed alpha
Helix 31
31
B
333 342Right-handed alpha
Helix 32
32
B
342 354Right-handed alpha
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There are 8 sheets in PDB entry 3LY0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 12first strand
Strand 2
A
48 55parallel
Strand 3
A
130 137parallel
Strand 4
A
112 114parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 12first strand
Strand 2
A
48 55parallel
Strand 3
A
130 137parallel
Strand 4
A
157 161parallel
Strand 5
A
205 206parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
177 178anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
258 261parallel
Strand 3
A
299 301parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 12first strand
Strand 2
B
48 56parallel
Strand 3
B
130 137parallel
Strand 4
B
112 114parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 12first strand
Strand 2
B
48 56parallel
Strand 3
B
130 137parallel
Strand 4
B
157 161parallel
Strand 5
B
205 206parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 78first strand
Strand 2
B
177 178anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 229first strand
Strand 2
B
258 261parallel
Strand 3
B
299 301parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il