Analysis of interatomic Contacts of Structural Units in PDB entry:
3LY2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LY2 entry

There are 8 chains in PDB entry 3LY2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 141PRO 485
B
 SER 141PRO 485
C
 ARG 155GLN 486
D
 VAL 158PRO 485
E
 GLY 157PRO 485
F
 VAL 158GLN 486
G
 ARG 155GLN 486
H
 ARG 155GLN 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are178 helices in PDB entry 3LY2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
159 161Right-handed 310
Helix 2
2
A
162 170Right-handed alpha
Helix 3
3
A
171 173Right-handed 310
Helix 4
4
A
179 186Right-handed alpha
Helix 5
5
A
190 203Right-handed alpha
Helix 6
6
A
204 209Right-handed alpha
Helix 7
7
A
212 225Right-handed alpha
Helix 8
8
A
235 251Right-handed alpha
Helix 9
9
A
252 256Right-handed 310
Helix 10
10
A
260 274Right-handed alpha
Helix 11
11
A
282 289Right-handed alpha
Helix 12
12
A
291 297Right-handed alpha
Helix 13
13
A
301 314Right-handed alpha
Helix 14
14
A
315 317Right-handed 310
Helix 15
15
A
327 344Right-handed alpha
Helix 16
16
A
345 348Right-handed 310
Helix 17
17
A
349 364Right-handed alpha
Helix 18
18
A
376 393Right-handed alpha
Helix 19
19
A
394 398Right-handed 310
Helix 20
20
A
399 424Right-handed alpha
Helix 21
21
A
438 450Right-handed alpha
Helix 22
22
A
450 462Right-handed alpha
Helix 23
23
A
466 483Right-handed alpha
Helix 24
24
B
152 157Right-handed 310
Helix 25
25
B
159 170Right-handed alpha
Helix 26
26
B
171 173Right-handed 310
Helix 27
27
B
179 186Right-handed alpha
Helix 28
28
B
190 203Right-handed alpha
Helix 29
29
B
204 209Right-handed alpha
Helix 30
30
B
212 226Right-handed alpha
Helix 31
31
B
235 251Right-handed alpha
Helix 32
32
B
252 256Right-handed 310
Helix 33
33
B
260 274Right-handed alpha
Helix 34
34
B
282 289Right-handed alpha
Helix 35
35
B
291 297Right-handed alpha
Helix 36
36
B
301 314Right-handed alpha
Helix 37
37
B
315 317Right-handed 310
Helix 38
38
B
327 344Right-handed alpha
Helix 39
39
B
345 348Right-handed 310
Helix 40
40
B
349 363Right-handed alpha
Helix 41
41
B
376 393Right-handed alpha
Helix 42
42
B
394 398Right-handed 310
Helix 43
43
B
399 424Right-handed alpha
Helix 44
44
B
438 450Right-handed alpha
Helix 45
45
B
450 462Right-handed alpha
Helix 46
46
B
466 483Right-handed alpha
Helix 47
47
C
162 170Right-handed alpha
Helix 48
48
C
171 173Right-handed 310
Helix 49
49
C
179 186Right-handed alpha
Helix 50
50
C
190 203Right-handed alpha
Helix 51
51
C
204 209Right-handed alpha
Helix 52
52
C
212 226Right-handed alpha
Helix 53
53
C
235 251Right-handed alpha
Helix 54
54
C
252 256Right-handed 310
Helix 55
55
C
260 274Right-handed alpha
Helix 56
56
C
282 289Right-handed alpha
Helix 57
57
C
291 297Right-handed alpha
Helix 58
58
C
301 314Right-handed alpha
Helix 59
59
C
315 317Right-handed 310
Helix 60
60
C
327 344Right-handed alpha
Helix 61
61
C
345 348Right-handed 310
Helix 62
62
C
349 363Right-handed alpha
Helix 63
63
C
376 393Right-handed alpha
Helix 64
64
C
394 398Right-handed 310
Helix 65
65
C
399 424Right-handed alpha
Helix 66
66
C
438 450Right-handed alpha
Helix 67
67
C
450 462Right-handed alpha
Helix 68
68
C
466 483Right-handed alpha
Helix 69
69
D
159 170Right-handed alpha
Helix 70
70
D
171 173Right-handed 310
Helix 71
71
D
179 186Right-handed alpha
Helix 72
72
D
190 203Right-handed alpha
Helix 73
73
D
204 209Right-handed alpha
Helix 74
74
D
212 225Right-handed alpha
Helix 75
75
D
235 250Right-handed alpha
Helix 76
76
D
251 256Right-handed 310
Helix 77
77
D
260 274Right-handed alpha
Helix 78
78
D
282 289Right-handed alpha
Helix 79
79
D
291 297Right-handed alpha
Helix 80
80
D
301 314Right-handed alpha
Helix 81
81
D
315 317Right-handed 310
Helix 82
82
D
327 344Right-handed alpha
Helix 83
83
D
345 348Right-handed 310
Helix 84
84
D
349 363Right-handed alpha
Helix 85
85
D
376 393Right-handed alpha
Helix 86
86
D
394 398Right-handed 310
Helix 87
87
D
399 425Right-handed alpha
Helix 88
88
D
438 450Right-handed alpha
Helix 89
89
D
450 462Right-handed alpha
Helix 90
90
D
466 482Right-handed alpha
Helix 91
91
E
162 170Right-handed alpha
Helix 92
92
E
171 173Right-handed 310
Helix 93
93
E
179 186Right-handed alpha
Helix 94
94
E
190 203Right-handed alpha
Helix 95
95
E
204 209Right-handed alpha
Helix 96
96
E
212 226Right-handed alpha
Helix 97
97
E
235 251Right-handed alpha
Helix 98
98
E
252 256Right-handed 310
Helix 99
99
E
260 274Right-handed alpha
Helix 100
100
E
282 289Right-handed alpha
Helix 101
101
E
291 297Right-handed alpha
Helix 102
102
E
301 314Right-handed alpha
Helix 103
103
E
315 317Right-handed 310
Helix 104
104
E
327 344Right-handed alpha
Helix 105
105
E
345 348Right-handed 310
Helix 106
106
E
349 363Right-handed alpha
Helix 107
107
E
376 393Right-handed alpha
Helix 108
108
E
394 398Right-handed 310
Helix 109
109
E
399 424Right-handed alpha
Helix 110
110
E
438 450Right-handed alpha
Helix 111
111
E
450 462Right-handed alpha
Helix 112
112
E
466 483Right-handed alpha
Helix 113
113
F
159 170Right-handed alpha
Helix 114
114
F
171 173Right-handed 310
Helix 115
115
F
179 186Right-handed alpha
Helix 116
116
F
190 203Right-handed alpha
Helix 117
117
F
204 209Right-handed alpha
Helix 118
118
F
212 225Right-handed alpha
Helix 119
119
F
235 250Right-handed alpha
Helix 120
120
F
251 256Right-handed 310
Helix 121
121
F
260 274Right-handed alpha
Helix 122
122
F
282 289Right-handed alpha
Helix 123
123
F
291 297Right-handed alpha
Helix 124
124
F
301 314Right-handed alpha
Helix 125
125
F
315 317Right-handed 310
Helix 126
126
F
327 344Right-handed alpha
Helix 127
127
F
345 348Right-handed 310
Helix 128
128
F
349 363Right-handed alpha
Helix 129
129
F
376 393Right-handed alpha
Helix 130
130
F
394 398Right-handed 310
Helix 131
131
F
399 425Right-handed alpha
Helix 132
132
F
438 450Right-handed alpha
Helix 133
133
F
450 462Right-handed alpha
Helix 134
134
F
466 482Right-handed alpha
Helix 135
135
G
159 170Right-handed alpha
Helix 136
136
G
171 173Right-handed 310
Helix 137
137
G
179 186Right-handed alpha
Helix 138
138
G
190 203Right-handed alpha
Helix 139
139
G
204 209Right-handed alpha
Helix 140
140
G
212 225Right-handed alpha
Helix 141
141
G
235 251Right-handed alpha
Helix 142
142
G
252 256Right-handed 310
Helix 143
143
G
260 274Right-handed alpha
Helix 144
144
G
282 289Right-handed alpha
Helix 145
145
G
291 297Right-handed alpha
Helix 146
146
G
301 314Right-handed alpha
Helix 147
147
G
315 317Right-handed 310
Helix 148
148
G
327 344Right-handed alpha
Helix 149
149
G
345 348Right-handed 310
Helix 150
150
G
349 363Right-handed alpha
Helix 151
151
G
376 393Right-handed alpha
Helix 152
152
G
394 398Right-handed 310
Helix 153
153
G
399 424Right-handed alpha
Helix 154
154
G
438 450Right-handed alpha
Helix 155
155
G
450 462Right-handed alpha
Helix 156
156
G
466 483Right-handed alpha
Helix 157
157
H
159 170Right-handed alpha
Helix 158
158
H
171 173Right-handed 310
Helix 159
159
H
179 186Right-handed alpha
Helix 160
160
H
190 203Right-handed alpha
Helix 161
161
H
204 209Right-handed alpha
Helix 162
162
H
212 225Right-handed alpha
Helix 163
163
H
235 251Right-handed alpha
Helix 164
164
H
252 256Right-handed 310
Helix 165
165
H
260 274Right-handed alpha
Helix 166
166
H
282 289Right-handed alpha
Helix 167
167
H
291 297Right-handed alpha
Helix 168
168
H
301 314Right-handed alpha
Helix 169
169
H
315 317Right-handed 310
Helix 170
170
H
327 344Right-handed alpha
Helix 171
171
H
345 348Right-handed 310
Helix 172
172
H
349 363Right-handed alpha
Helix 173
173
H
376 393Right-handed alpha
Helix 174
174
H
394 398Right-handed 310
Helix 175
175
H
399 424Right-handed alpha
Helix 176
176
H
438 450Right-handed alpha
Helix 177
177
H
450 462Right-handed alpha
Helix 178
178
H
466 483Right-handed alpha
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There are 2 sheets in PDB entry 3LY2. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
365 366first strand
Strand 2
D
372 373anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
365 366first strand
Strand 2
F
372 373anti-parallel
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