Analysis of interatomic Contacts of Structural Units in PDB entry:
3LY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LY5 entry

There are 2 chains in PDB entry 3LY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 171VAL 386
B
 GLY 169VAL 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3LY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
174 178Right-handed 310
Helix 2
2
A
187 197Right-handed alpha
Helix 3
3
A
203 216Right-handed alpha
Helix 4
4
A
228 244Right-handed alpha
Helix 5
5
A
247 251Right-handed 310
Helix 6
6
A
260 275Right-handed alpha
Helix 7
7
A
290 301Right-handed alpha
Helix 8
8
A
308 319Right-handed alpha
Helix 9
9
A
334 341Right-handed alpha
Helix 10
10
A
343 354Right-handed alpha
Helix 11
11
A
368 379Right-handed alpha
Helix 12
12
B
174 178Right-handed 310
Helix 13
13
B
187 196Right-handed alpha
Helix 14
14
B
203 216Right-handed alpha
Helix 15
15
B
228 244Right-handed alpha
Helix 16
16
B
260 275Right-handed alpha
Helix 17
17
B
290 300Right-handed alpha
Helix 18
18
B
308 319Right-handed alpha
Helix 19
19
B
334 341Right-handed alpha
Helix 20
20
B
343 354Right-handed alpha
Helix 21
21
B
368 379Right-handed alpha
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There are 2 sheets in PDB entry 3LY5. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 285first strand
Strand 2
A
304 307parallel
Strand 3
A
254 257parallel
Strand 4
A
329 332parallel
Strand 5
A
359 363parallel
Strand 6
A
220 221parallel
Strand 7
A
384 385parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 285first strand
Strand 2
B
304 307parallel
Strand 3
B
254 257parallel
Strand 4
B
329 332parallel
Strand 5
B
359 363parallel
Strand 6
B
220 221parallel
Strand 7
B
384 385parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il