Analysis of interatomic Contacts of Structural Units in PDB entry:
3LY6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3LY6 entry

There are 3 chains in PDB entry 3LY6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	LEU 688
B	GLU 4	LEU 688
C	GLU 4	LEU 688

There are 42 helices in PDB entry 3LY6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	15	21	Right-handed alpha
Helix 2	2	A	152	161	Right-handed alpha
Helix 3	3	A	188	198	Right-handed alpha
Helix 4	4	A	200	205	Right-handed alpha
Helix 5	5	A	206	214	Right-handed alpha
Helix 6	6	A	216	229	Right-handed alpha
Helix 7	7	A	250	254	Right-handed 310
Helix 8	8	A	256	266	Right-handed alpha
Helix 9	9	A	276	292	Right-handed alpha
Helix 10	10	A	376	382	Right-handed alpha
Helix 11	11	A	389	399	Right-handed alpha
Helix 12	12	A	440	443	Right-handed 310
Helix 13	13	A	449	459	Right-handed alpha
Helix 14	14	A	547	551	Right-handed 310
Helix 15	15	B	15	21	Right-handed alpha
Helix 16	16	B	152	161	Right-handed alpha
Helix 17	17	B	188	198	Right-handed alpha
Helix 18	18	B	200	205	Right-handed alpha
Helix 19	19	B	206	214	Right-handed alpha
Helix 20	20	B	216	227	Right-handed alpha
Helix 21	21	B	250	254	Right-handed 310
Helix 22	22	B	256	266	Right-handed alpha
Helix 23	23	B	276	292	Right-handed alpha
Helix 24	24	B	376	382	Right-handed alpha
Helix 25	25	B	389	399	Right-handed alpha
Helix 26	26	B	440	443	Right-handed 310
Helix 27	27	B	449	459	Right-handed alpha
Helix 28	28	B	547	551	Right-handed 310
Helix 29	29	C	15	21	Right-handed alpha
Helix 30	30	C	152	161	Right-handed alpha
Helix 31	31	C	188	198	Right-handed alpha
Helix 32	32	C	200	205	Right-handed alpha
Helix 33	33	C	206	214	Right-handed alpha
Helix 34	34	C	216	229	Right-handed alpha
Helix 35	35	C	250	254	Right-handed 310
Helix 36	36	C	256	266	Right-handed alpha
Helix 37	37	C	276	292	Right-handed alpha
Helix 38	38	C	376	382	Right-handed alpha
Helix 39	39	C	389	399	Right-handed alpha
Helix 40	40	C	440	443	Right-handed 310
Helix 41	41	C	449	459	Right-handed alpha
Helix 42	42	C	547	551	Right-handed 310

There are 30 sheets in PDB entry 3LY6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	34	first strand
Strand 2	A	129	138	parallel
Strand 3	A	113	122	anti-parallel
Strand 4	A	56	62	anti-parallel
Strand 5	A	74	78	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	44	first strand
Strand 2	A	99	105	anti-parallel
Strand 3	A	89	92	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	170	first strand
Strand 2	A	175	181	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	272	275	parallel

Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	375	first strand
Strand 2	A	353	363	anti-parallel
Strand 3	A	332	342	anti-parallel
Strand 4	A	295	303	anti-parallel
Strand 5	A	424	429	anti-parallel
Strand 6	A	436	438	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	317	first strand
Strand 2	A	400	406	parallel
Strand 3	A	412	414	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	478	first strand
Strand 2	A	489	497	anti-parallel
Strand 3	A	538	546	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	534	first strand
Strand 2	A	503	514	anti-parallel
Strand 3	A	560	569	anti-parallel
Strand 4	A	574	583	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	594	first strand
Strand 2	A	603	610	anti-parallel
Strand 3	A	647	654	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	634	638	first strand
Strand 2	A	620	625	anti-parallel
Strand 3	A	660	669	anti-parallel
Strand 4	A	676	684	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	34	first strand
Strand 2	B	129	138	parallel
Strand 3	B	113	120	anti-parallel
Strand 4	B	58	62	anti-parallel
Strand 5	B	74	78	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	44	first strand
Strand 2	B	99	105	anti-parallel
Strand 3	B	89	92	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	170	first strand
Strand 2	B	175	181	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	239	first strand
Strand 2	B	272	275	parallel

Back to list of sheets
Back to top of page

There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	375	first strand
Strand 2	B	353	363	anti-parallel
Strand 3	B	332	342	anti-parallel
Strand 4	B	295	303	anti-parallel
Strand 5	B	424	429	anti-parallel
Strand 6	B	436	438	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	317	first strand
Strand 2	B	400	406	parallel
Strand 3	B	412	414	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	478	first strand
Strand 2	B	489	497	anti-parallel
Strand 3	B	538	546	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	534	first strand
Strand 2	B	503	514	anti-parallel
Strand 3	B	560	569	anti-parallel
Strand 4	B	574	583	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	590	594	first strand
Strand 2	B	603	610	anti-parallel
Strand 3	B	647	654	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	634	638	first strand
Strand 2	B	620	625	anti-parallel
Strand 3	B	660	669	anti-parallel
Strand 4	B	676	684	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	34	first strand
Strand 2	C	129	138	parallel
Strand 3	C	113	120	anti-parallel
Strand 4	C	58	62	anti-parallel
Strand 5	C	74	78	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	44	first strand
Strand 2	C	99	105	anti-parallel
Strand 3	C	89	92	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	170	first strand
Strand 2	C	175	181	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	239	first strand
Strand 2	C	272	275	parallel

Back to list of sheets
Back to top of page

There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	368	375	first strand
Strand 2	C	353	363	anti-parallel
Strand 3	C	332	342	anti-parallel
Strand 4	C	295	303	anti-parallel
Strand 5	C	424	429	anti-parallel
Strand 6	C	436	438	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	317	first strand
Strand 2	C	400	406	parallel
Strand 3	C	412	414	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	478	first strand
Strand 2	C	489	497	anti-parallel
Strand 3	C	538	546	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	520	534	first strand
Strand 2	C	503	514	anti-parallel
Strand 3	C	560	569	anti-parallel
Strand 4	C	574	583	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	590	594	first strand
Strand 2	C	603	610	anti-parallel
Strand 3	C	647	654	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	634	638	first strand
Strand 2	C	620	625	anti-parallel
Strand 3	C	660	669	anti-parallel
Strand 4	C	676	684	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3LY6

Analysis of interatomic Contacts of Structural Units in PDB entry:
3LY6