Analysis of interatomic Contacts of Structural Units in PDB entry:
3LYB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LYB entry

There are 4 chains in PDB entry 3LYB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 15PRO 150
B
 TYR 14PRO 150
C
 ALA 16PRO 150
D
 TYR 14PRO 150
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 3LYB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 46Right-handed 310
Helix 2
2
A
47 55Right-handed alpha
Helix 3
3
A
59 86Right-handed alpha
Helix 4
4
A
90 92Right-handed 310
Helix 5
5
A
103 105Right-handed 310
Helix 6
6
A
106 118Right-handed alpha
Helix 7
7
B
42 46Right-handed 310
Helix 8
8
B
47 54Right-handed alpha
Helix 9
9
B
59 86Right-handed alpha
Helix 10
10
B
90 92Right-handed 310
Helix 11
11
B
103 105Right-handed 310
Helix 12
12
B
106 116Right-handed alpha
Helix 13
13
C
42 46Right-handed 310
Helix 14
14
C
47 55Right-handed alpha
Helix 15
15
C
59 86Right-handed alpha
Helix 16
16
C
90 92Right-handed 310
Helix 17
17
C
103 105Right-handed 310
Helix 18
18
C
106 118Right-handed alpha
Helix 19
19
D
42 46Right-handed 310
Helix 20
20
D
47 55Right-handed alpha
Helix 21
21
D
59 86Right-handed alpha
Helix 22
22
D
90 92Right-handed 310
Helix 23
23
D
103 105Right-handed 310
Helix 24
24
D
106 116Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3LYB. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 20first strand
Strand 2
A
23 26anti-parallel
Strand 3
A
141 148anti-parallel
Strand 4
A
94 101anti-parallel
Strand 5
A
124 129parallel
Strand 6
D
132 133anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 20first strand
Strand 2
B
23 26anti-parallel
Strand 3
B
141 148anti-parallel
Strand 4
B
94 101anti-parallel
Strand 5
B
124 129parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 20first strand
Strand 2
C
23 26anti-parallel
Strand 3
C
141 148anti-parallel
Strand 4
C
94 101anti-parallel
Strand 5
C
124 129parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 20first strand
Strand 2
D
23 26anti-parallel
Strand 3
D
141 148anti-parallel
Strand 4
D
94 101anti-parallel
Strand 5
D
124 129parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il