Analysis of interatomic Contacts of Structural Units in PDB entry:
3LYK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LYK entry

There are 2 chains in PDB entry 3LYK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 10GLY 201
B
 SER 6GLY 201
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3LYK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 33Right-handed alpha
Helix 2
2
A
47 54Right-handed alpha
Helix 3
3
A
71 83Right-handed alpha
Helix 4
4
A
92 110Right-handed alpha
Helix 5
5
A
110 120Right-handed alpha
Helix 6
6
A
121 139Right-handed alpha
Helix 7
7
A
139 146Right-handed alpha
Helix 8
8
A
155 170Right-handed alpha
Helix 9
9
A
179 192Right-handed alpha
Helix 10
10
A
193 200Right-handed alpha
Helix 11
11
B
19 32Right-handed alpha
Helix 12
12
B
47 54Right-handed alpha
Helix 13
13
B
71 83Right-handed alpha
Helix 14
14
B
92 110Right-handed alpha
Helix 15
15
B
110 120Right-handed alpha
Helix 16
16
B
121 139Right-handed alpha
Helix 17
17
B
140 145Right-handed 310
Helix 18
18
B
155 170Right-handed alpha
Helix 19
19
B
179 192Right-handed alpha
Helix 20
20
B
193 200Right-handed alpha
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There are 2 sheets in PDB entry 3LYK. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
11 15parallel
Strand 3
A
61 64anti-parallel
Strand 4
A
67 70anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 40first strand
Strand 2
B
7 15parallel
Strand 3
B
61 64anti-parallel
Strand 4
B
67 70anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il