Analysis of interatomic Contacts of Structural Units in PDB entry:
3LYL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LYL entry

There are 4 chains in PDB entry 3LYL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ALA 247
B
 MSE 1ALA 247
C
 MSE 1ALA 247
D
 MSE 1ALA 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 3LYL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 28Right-handed alpha
Helix 2
2
A
38 52Right-handed alpha
Helix 3
3
A
65 79Right-handed alpha
Helix 4
4
A
97 101Right-handed 310
Helix 5
5
A
102 114Right-handed alpha
Helix 6
6
A
114 132Right-handed alpha
Helix 7
7
A
142 147Right-handed alpha
Helix 8
8
A
151 173Right-handed alpha
Helix 9
9
A
196 205Right-handed alpha
Helix 10
10
A
214 227Right-handed alpha
Helix 11
11
A
228 231Right-handed 310
Helix 12
12
B
15 28Right-handed alpha
Helix 13
13
B
38 52Right-handed alpha
Helix 14
14
B
65 79Right-handed alpha
Helix 15
15
B
102 114Right-handed alpha
Helix 16
16
B
114 132Right-handed alpha
Helix 17
17
B
141 147Right-handed alpha
Helix 18
18
B
151 173Right-handed alpha
Helix 19
19
B
196 207Right-handed alpha
Helix 20
20
B
214 227Right-handed alpha
Helix 21
21
B
228 231Right-handed 310
Helix 22
22
C
15 28Right-handed alpha
Helix 23
23
C
38 52Right-handed alpha
Helix 24
24
C
65 79Right-handed alpha
Helix 25
25
C
97 101Right-handed 310
Helix 26
26
C
102 114Right-handed alpha
Helix 27
27
C
114 132Right-handed alpha
Helix 28
28
C
141 147Right-handed alpha
Helix 29
29
C
151 173Right-handed alpha
Helix 30
30
C
189 195Right-handed alpha
Helix 31
31
C
196 205Right-handed alpha
Helix 32
32
C
214 227Right-handed alpha
Helix 33
33
C
228 231Right-handed 310
Helix 34
34
D
15 27Right-handed alpha
Helix 35
35
D
38 52Right-handed alpha
Helix 36
36
D
65 79Right-handed alpha
Helix 37
37
D
102 114Right-handed alpha
Helix 38
38
D
114 131Right-handed alpha
Helix 39
39
D
142 147Right-handed alpha
Helix 40
40
D
151 173Right-handed alpha
Helix 41
41
D
199 204Right-handed alpha
Helix 42
42
D
205 207Right-handed 310
Helix 43
43
D
214 227Right-handed alpha
Helix 44
44
D
228 231Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 3LYL. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
31 36parallel
Strand 3
A
7 10parallel
Strand 4
A
85 88parallel
Strand 5
A
134 139parallel
Strand 6
A
177 184parallel
Strand 7
A
237 240parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 60first strand
Strand 2
B
31 36parallel
Strand 3
B
7 10parallel
Strand 4
B
85 88parallel
Strand 5
B
134 139parallel
Strand 6
B
177 184parallel
Strand 7
B
237 240parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 60first strand
Strand 2
C
31 36parallel
Strand 3
C
7 10parallel
Strand 4
C
85 88parallel
Strand 5
C
134 139parallel
Strand 6
C
177 184parallel
Strand 7
C
237 240parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 60first strand
Strand 2
D
31 36parallel
Strand 3
D
7 10parallel
Strand 4
D
85 88parallel
Strand 5
D
134 139parallel
Strand 6
D
177 184parallel
Strand 7
D
237 240parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il