Analysis of interatomic Contacts of Structural Units in PDB entry:
3LYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LYP entry

There are 2 chains in PDB entry 3LYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 8ARG 207
B
 LEU 9ARG 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3LYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 31Right-handed alpha
Helix 2
2
A
45 52Right-handed alpha
Helix 3
3
A
69 81Right-handed alpha
Helix 4
4
A
90 108Right-handed alpha
Helix 5
5
A
108 117Right-handed alpha
Helix 6
6
A
121 140Right-handed alpha
Helix 7
7
A
141 145Right-handed 310
Helix 8
8
A
155 167Right-handed alpha
Helix 9
9
A
176 178Right-handed 310
Helix 10
10
A
179 192Right-handed alpha
Helix 11
11
A
192 199Right-handed alpha
Helix 12
12
A
200 206Right-handed alpha
Helix 13
13
B
17 31Right-handed alpha
Helix 14
14
B
45 52Right-handed alpha
Helix 15
15
B
69 81Right-handed alpha
Helix 16
16
B
90 108Right-handed alpha
Helix 17
17
B
108 117Right-handed alpha
Helix 18
18
B
121 140Right-handed alpha
Helix 19
19
B
141 144Right-handed 310
Helix 20
20
B
155 167Right-handed alpha
Helix 21
21
B
176 178Right-handed 310
Helix 22
22
B
179 192Right-handed alpha
Helix 23
23
B
192 199Right-handed alpha
Helix 24
24
B
200 205Right-handed alpha
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There are 2 sheets in PDB entry 3LYP. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
10 13parallel
Strand 3
A
59 61anti-parallel
Strand 4
A
66 68anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 38first strand
Strand 2
B
10 13parallel
Strand 3
B
59 62anti-parallel
Strand 4
B
65 68anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il