Analysis of interatomic Contacts of Structural Units in PDB entry:
3LYQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LYQ entry

There are 2 chains in PDB entry 3LYQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3GLU 185
B
 LEU 2PRO 187
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3LYQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 56Right-handed alpha
Helix 2
2
A
59 84Right-handed alpha
Helix 3
3
A
91 106Right-handed alpha
Helix 4
4
A
118 126Right-handed alpha
Helix 5
5
A
126 137Right-handed alpha
Helix 6
6
A
141 165Right-handed alpha
Helix 7
7
A
169 183Right-handed alpha
Helix 8
8
B
40 54Right-handed alpha
Helix 9
9
B
58 86Right-handed alpha
Helix 10
10
B
91 106Right-handed alpha
Helix 11
11
B
118 126Right-handed alpha
Helix 12
12
B
126 137Right-handed alpha
Helix 13
13
B
141 165Right-handed alpha
Helix 14
14
B
169 177Right-handed alpha
Helix 15
15
B
181 186Right-handed alpha
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There are 2 sheets in PDB entry 3LYQ. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
9 17anti-parallel
Strand 3
A
23 31anti-parallel
Strand 4
B
35 39anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
B
23 31anti-parallel
Strand 3
B
9 17anti-parallel
Strand 4
B
4 6anti-parallel
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