Analysis of interatomic Contacts of Structural Units in PDB entry:
3LYU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LYU entry

There are 6 chains in PDB entry 3LYU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 88LEU 216
B
 GLY 88HIS 218
C
 GLY 88GLU 217
D
 GLY 88HIS 218
E
 GLY 88HIS 218
F
 GLY 88HIS 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3LYU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
109 124Right-handed alpha
Helix 2
2
A
137 139Right-handed 310
Helix 3
3
A
141 147Right-handed alpha
Helix 4
4
A
164 186Right-handed alpha
Helix 5
5
A
197 211Right-handed alpha
Helix 6
6
B
109 124Right-handed alpha
Helix 7
7
B
137 139Right-handed 310
Helix 8
8
B
141 147Right-handed alpha
Helix 9
9
B
164 186Right-handed alpha
Helix 10
10
B
197 211Right-handed alpha
Helix 11
11
C
109 124Right-handed alpha
Helix 12
12
C
137 139Right-handed 310
Helix 13
13
C
141 147Right-handed alpha
Helix 14
14
C
164 186Right-handed alpha
Helix 15
15
C
197 211Right-handed alpha
Helix 16
16
D
109 124Right-handed alpha
Helix 17
17
D
137 139Right-handed 310
Helix 18
18
D
141 147Right-handed alpha
Helix 19
19
D
164 186Right-handed alpha
Helix 20
20
D
197 210Right-handed alpha
Helix 21
21
E
109 124Right-handed alpha
Helix 22
22
E
137 139Right-handed 310
Helix 23
23
E
141 147Right-handed alpha
Helix 24
24
E
164 186Right-handed alpha
Helix 25
25
E
197 211Right-handed alpha
Helix 26
26
F
109 124Right-handed alpha
Helix 27
27
F
137 139Right-handed 310
Helix 28
28
F
141 147Right-handed alpha
Helix 29
29
F
164 186Right-handed alpha
Helix 30
30
F
197 211Right-handed alpha
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There are 6 sheets in PDB entry 3LYU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 157first strand
Strand 2
A
127 135parallel
Strand 3
A
101 107parallel
Strand 4
A
191 195parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 157first strand
Strand 2
B
127 135parallel
Strand 3
B
101 107parallel
Strand 4
B
191 195parallel
Strand 5
B
215 217parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 157first strand
Strand 2
C
127 135parallel
Strand 3
C
101 107parallel
Strand 4
C
191 195parallel
Strand 5
C
215 216parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
151 157first strand
Strand 2
D
127 135parallel
Strand 3
D
101 107parallel
Strand 4
D
191 195parallel
Strand 5
D
215 216parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
151 157first strand
Strand 2
E
127 135parallel
Strand 3
E
101 107parallel
Strand 4
E
191 195parallel
Strand 5
E
215 216parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
151 157first strand
Strand 2
F
127 135parallel
Strand 3
F
101 107parallel
Strand 4
F
191 195parallel
Strand 5
F
215 216parallel
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