Analysis of interatomic Contacts of Structural Units in PDB entry:
3LYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LYV entry

There are 6 chains in PDB entry 3LYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLU 60
B
 GLN 2LEU 59
C
 GLN 2LEU 59
D
 THR 10LYS 58
E
 MSE 1GLU 56
F
 GLN 2ALA 57
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 3LYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 25Right-handed alpha
Helix 2
2
B
15 26Right-handed alpha
Helix 3
3
C
15 26Right-handed alpha
Helix 4
4
D
15 27Right-handed alpha
Helix 5
5
E
15 27Right-handed alpha
Helix 6
6
F
16 26Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3LYV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
30 35parallel
Strand 3
A
41 46anti-parallel
Strand 4
A
52 57anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 14first strand
Strand 2
B
30 35parallel
Strand 3
B
41 46anti-parallel
Strand 4
B
52 57anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 8first strand
Strand 2
F
53 56parallel
Strand 3
F
42 45anti-parallel
Strand 4
F
30 33anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 14first strand
Strand 2
C
30 35parallel
Strand 3
C
41 46anti-parallel
Strand 4
C
52 58anti-parallel
Strand 5
F
7 10parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
30 34first strand
Strand 2
D
41 46anti-parallel
Strand 3
D
52 58anti-parallel
Strand 4
E
5 10parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
30 33first strand
Strand 2
E
42 45anti-parallel
Strand 3
E
53 55anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il