Analysis of interatomic Contacts of Structural Units in PDB entry:
3M07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3M07 entry

There is 1 chain in PDB entry 3M07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 6GLN 589
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3M07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
109 113Right-handed 310
Helix 2
2
A
119 124Right-handed alpha
Helix 3
3
A
128 134Right-handed alpha
Helix 4
4
A
135 143Right-handed alpha
Helix 5
5
A
177 191Right-handed alpha
Helix 6
6
A
210 215Right-handed alpha
Helix 7
7
A
235 253Right-handed alpha
Helix 8
8
A
262 266Right-handed 310
Helix 9
9
A
273 286Right-handed alpha
Helix 10
10
A
321 334Right-handed alpha
Helix 11
11
A
337 344Right-handed 310
Helix 12
12
A
346 358Right-handed alpha
Helix 13
13
A
381 383Right-handed 310
Helix 14
14
A
391 397Right-handed alpha
Helix 15
15
A
403 409Right-handed alpha
Helix 16
16
A
409 423Right-handed alpha
Helix 17
17
A
432 436Right-handed 310
Helix 18
18
A
448 462Right-handed alpha
Helix 19
19
A
463 467Right-handed 310
Helix 20
20
A
476 482Right-handed alpha
Helix 21
21
A
486 492Right-handed alpha
Helix 22
22
A
492 513Right-handed alpha
Helix 23
23
A
513 518Right-handed alpha
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There are 8 sheets in PDB entry 3M07. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 16first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
50 56anti-parallel
Strand 4
A
44 45anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
32 36anti-parallel
Strand 3
A
63 68anti-parallel
Strand 4
A
73 74anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
32 36anti-parallel
Strand 3
A
63 68anti-parallel
Strand 4
A
90 91anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
146 149parallel
Strand 3
A
194 199parallel
Strand 4
A
257 260parallel
Strand 5
A
292 295parallel
Strand 6
A
318 320parallel
Strand 7
A
385 387parallel
Strand 8
A
426 430parallel
Strand 9
A
115 118parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
167 171anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 225first strand
Strand 2
A
228 231anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
525 531first strand
Strand 2
A
534 541anti-parallel
Strand 3
A
544 551anti-parallel
Strand 4
A
582 588anti-parallel
Strand 5
A
565 570anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
557 558first strand
Strand 2
A
577 578anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il