Analysis of interatomic Contacts of Structural Units in PDB entry:
3M17


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3M17 entry

There are 20 chains in PDB entry 3M17 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5LEU 267
B
 ILE 1MET 99
C
 LEU 5LEU 267
D
 ILE 1MET 99
E
 LEU 5LEU 267
F
 ILE 1MET 99
G
 LEU 5LEU 267
H
 ILE 1MET 99
I
 ARG 1PHE 2
I
 THR 4GLY 8
I
 TYR 11CYS 13
J
 ARG 1PHE 2
J
 THR 4GLY 8
J
 TYR 11CYS 13
K
 ARG 1PHE 2
K
 THR 4GLY 8
K
 TYR 11CYS 13
L
 ARG 1PHE 2
L
 THR 4GLY 8
L
 TYR 11CYS 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3M17. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 54Right-handed 310
Helix 2
2
A
59 79Right-handed alpha
Helix 3
3
A
80 82Right-handed 310
Helix 4
4
A
131 144Right-handed alpha
Helix 5
5
A
146 157Right-handed alpha
Helix 6
6
A
157 170Right-handed alpha
Helix 7
7
A
170 176Right-handed alpha
Helix 8
8
A
246 248Right-handed 310
Helix 9
9
C
49 54Right-handed 310
Helix 10
10
C
59 79Right-handed alpha
Helix 11
11
C
80 82Right-handed 310
Helix 12
12
C
131 143Right-handed alpha
Helix 13
13
C
146 157Right-handed alpha
Helix 14
14
C
157 170Right-handed alpha
Helix 15
15
C
170 175Right-handed alpha
Helix 16
16
C
246 248Right-handed 310
Helix 17
17
E
49 54Right-handed 310
Helix 18
18
E
59 79Right-handed alpha
Helix 19
19
E
80 82Right-handed 310
Helix 20
20
E
131 144Right-handed alpha
Helix 21
21
E
146 157Right-handed alpha
Helix 22
22
E
157 170Right-handed alpha
Helix 23
23
E
170 175Right-handed alpha
Helix 24
24
G
49 54Right-handed 310
Helix 25
25
G
59 79Right-handed alpha
Helix 26
26
G
80 82Right-handed 310
Helix 27
27
G
131 144Right-handed alpha
Helix 28
28
G
146 157Right-handed alpha
Helix 29
29
G
157 170Right-handed alpha
Helix 30
30
G
170 175Right-handed alpha
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There are 28 sheets in PDB entry 3M17. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
33 39anti-parallel
Strand 3
A
24 30anti-parallel
Strand 4
A
7 14anti-parallel
Strand 5
A
89 98anti-parallel
Strand 6
A
104 112anti-parallel
Strand 7
A
115 121anti-parallel
Strand 8
A
126 128anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 188first strand
Strand 2
A
193 203anti-parallel
Strand 3
A
234 243anti-parallel
Strand 4
A
225 228anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 220first strand
Strand 2
A
209 214anti-parallel
Strand 3
A
250 255anti-parallel
Strand 4
A
263 265anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
50 51anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
55 56anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
91 94anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 47first strand
Strand 2
C
33 39anti-parallel
Strand 3
C
24 30anti-parallel
Strand 4
C
6 14anti-parallel
Strand 5
C
89 98anti-parallel
Strand 6
C
104 112anti-parallel
Strand 7
C
115 121anti-parallel
Strand 8
C
126 128anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
181 188first strand
Strand 2
C
193 203anti-parallel
Strand 3
C
234 243anti-parallel
Strand 4
C
223 228anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
217 218first strand
Strand 2
C
209 214anti-parallel
Strand 3
C
250 255anti-parallel
Strand 4
C
263 265anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 11first strand
Strand 2
D
21 30anti-parallel
Strand 3
D
62 70anti-parallel
Strand 4
D
50 51anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 11first strand
Strand 2
D
21 30anti-parallel
Strand 3
D
62 70anti-parallel
Strand 4
D
55 56anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 45first strand
Strand 2
D
36 41anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
91 94anti-parallel
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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
46 47first strand
Strand 2
E
33 39anti-parallel
Strand 3
E
24 30anti-parallel
Strand 4
E
6 14anti-parallel
Strand 5
E
89 98anti-parallel
Strand 6
E
104 112anti-parallel
Strand 7
E
115 121anti-parallel
Strand 8
E
126 128anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
181 188first strand
Strand 2
E
193 203anti-parallel
Strand 3
E
234 243anti-parallel
Strand 4
E
223 228anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
217 218first strand
Strand 2
E
209 214anti-parallel
Strand 3
E
250 255anti-parallel
Strand 4
E
263 266anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
6 11first strand
Strand 2
F
21 30anti-parallel
Strand 3
F
62 70anti-parallel
Strand 4
F
50 51anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
6 11first strand
Strand 2
F
21 30anti-parallel
Strand 3
F
62 70anti-parallel
Strand 4
F
55 56anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
44 45first strand
Strand 2
F
36 41anti-parallel
Strand 3
F
78 84anti-parallel
Strand 4
F
87 94anti-parallel
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There are 8 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
46 47first strand
Strand 2
G
33 39anti-parallel
Strand 3
G
24 30anti-parallel
Strand 4
G
6 14anti-parallel
Strand 5
G
89 97anti-parallel
Strand 6
G
107 112anti-parallel
Strand 7
G
115 121anti-parallel
Strand 8
G
126 128anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
181 188first strand
Strand 2
G
194 203anti-parallel
Strand 3
G
234 242anti-parallel
Strand 4
G
226 228anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
217 220first strand
Strand 2
G
209 214anti-parallel
Strand 3
G
250 255anti-parallel
Strand 4
G
263 266anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 11first strand
Strand 2
H
21 30anti-parallel
Strand 3
H
62 70anti-parallel
Strand 4
H
50 51anti-parallel
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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 11first strand
Strand 2
H
21 30anti-parallel
Strand 3
H
62 70anti-parallel
Strand 4
H
55 56anti-parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
44 45first strand
Strand 2
H
36 41anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
91 94anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
2 4first strand
Strand 2
I
10 12anti-parallel
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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
2 4first strand
Strand 2
J
10 12anti-parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
2 4first strand
Strand 2
K
10 12anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
2 4first strand
Strand 2
L
10 12anti-parallel
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