Analysis of interatomic Contacts of Structural Units in PDB entry:
3M1B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3M1B entry

There are 13 chains in PDB entry 3M1B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5LEU 267
B
 ILE 1MET 99
C
 LEU 5LEU 267
D
 ILE 1MET 99
E
 LEU 5LEU 267
F
 ILE 1MET 99
G
 LEU 5LEU 267
H
 ILE 1MET 99
I
 THR 4GLY 8
I
 TYR 11CYS 13
J
 PHE 102PHE 102
J
 THR 104GLY 108
J
 TYR 111CYS 113
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3M1B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 52Right-handed 310
Helix 2
2
A
59 82Right-handed alpha
Helix 3
3
A
132 135Right-handed 310
Helix 4
4
A
136 144Right-handed alpha
Helix 5
5
A
148 157Right-handed alpha
Helix 6
6
A
157 176Right-handed alpha
Helix 7
7
A
245 248Right-handed 310
Helix 8
8
C
48 53Right-handed 310
Helix 9
9
C
59 81Right-handed alpha
Helix 10
10
C
131 139Right-handed alpha
Helix 11
11
C
148 157Right-handed alpha
Helix 12
12
C
157 170Right-handed alpha
Helix 13
13
C
170 175Right-handed alpha
Helix 14
14
C
246 250Right-handed 310
Helix 15
15
E
48 52Right-handed 310
Helix 16
16
E
59 79Right-handed alpha
Helix 17
17
E
122 125Right-handed 310
Helix 18
18
E
131 144Right-handed alpha
Helix 19
19
E
148 157Right-handed alpha
Helix 20
20
E
158 170Right-handed alpha
Helix 21
21
E
170 176Right-handed alpha
Helix 22
22
E
246 248Right-handed 310
Helix 23
23
G
59 81Right-handed alpha
Helix 24
24
G
121 125Right-handed 310
Helix 25
25
G
132 144Right-handed alpha
Helix 26
26
G
146 157Right-handed alpha
Helix 27
27
G
157 169Right-handed alpha
Helix 28
28
G
170 176Right-handed alpha
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There are 30 sheets in PDB entry 3M1B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
33 38anti-parallel
Strand 3
A
24 30anti-parallel
Strand 4
A
7 14anti-parallel
Strand 5
A
89 98anti-parallel
Strand 6
A
104 106anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
33 38anti-parallel
Strand 3
A
24 30anti-parallel
Strand 4
A
7 14anti-parallel
Strand 5
A
89 98anti-parallel
Strand 6
A
109 112anti-parallel
Strand 7
A
116 121anti-parallel
Strand 8
A
126 128anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 185first strand
Strand 2
A
197 203anti-parallel
Strand 3
A
234 239anti-parallel
Strand 4
A
223 228anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
241 242anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 218first strand
Strand 2
A
209 214anti-parallel
Strand 3
A
250 255anti-parallel
Strand 4
A
263 265anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
23 30anti-parallel
Strand 3
B
62 68anti-parallel
Strand 4
B
50 51anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
23 30anti-parallel
Strand 3
B
62 68anti-parallel
Strand 4
B
55 56anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
91 94anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 39first strand
Strand 2
C
24 30anti-parallel
Strand 3
C
7 14anti-parallel
Strand 4
C
89 96anti-parallel
Strand 5
C
110 112anti-parallel
Strand 6
C
115 121anti-parallel
Strand 7
C
126 128anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
181 182first strand
Strand 2
C
200 203anti-parallel
Strand 3
C
234 236anti-parallel
Strand 4
C
226 228anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 194first strand
Strand 2
C
242 243anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
208 212first strand
Strand 2
C
252 256anti-parallel
Strand 3
C
263 265anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 11first strand
Strand 2
D
21 30anti-parallel
Strand 3
D
62 70anti-parallel
Strand 4
D
50 55anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 41first strand
Strand 2
D
78 84anti-parallel
Strand 3
D
91 94anti-parallel
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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
33 39first strand
Strand 2
E
24 30anti-parallel
Strand 3
E
6 14anti-parallel
Strand 4
E
89 97anti-parallel
Strand 5
E
107 112anti-parallel
Strand 6
E
115 121anti-parallel
Strand 7
E
126 128anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
181 188first strand
Strand 2
E
194 201anti-parallel
Strand 3
E
234 242anti-parallel
Strand 4
E
223 224anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
181 188first strand
Strand 2
E
194 201anti-parallel
Strand 3
E
234 242anti-parallel
Strand 4
E
227 228anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
209 210first strand
Strand 2
E
250 255anti-parallel
Strand 3
E
213 214anti-parallel
Strand 4
E
217 218anti-parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
209 210first strand
Strand 2
E
250 255anti-parallel
Strand 3
E
263 265anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
9 11first strand
Strand 2
F
21 28anti-parallel
Strand 3
F
62 70anti-parallel
Strand 4
F
50 51anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
9 11first strand
Strand 2
F
21 28anti-parallel
Strand 3
F
62 70anti-parallel
Strand 4
F
55 56anti-parallel
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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
36 41first strand
Strand 2
F
78 83anti-parallel
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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
33 39first strand
Strand 2
G
24 30anti-parallel
Strand 3
G
7 13anti-parallel
Strand 4
G
90 97anti-parallel
Strand 5
G
105 106anti-parallel
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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
33 39first strand
Strand 2
G
24 30anti-parallel
Strand 3
G
7 13anti-parallel
Strand 4
G
90 97anti-parallel
Strand 5
G
110 112anti-parallel
Strand 6
G
115 118anti-parallel
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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
181 188first strand
Strand 2
G
193 203anti-parallel
Strand 3
G
234 243anti-parallel
Strand 4
G
223 228anti-parallel
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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
208 211first strand
Strand 2
G
252 256anti-parallel
Strand 3
G
263 265anti-parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
213 214first strand
Strand 2
G
217 218anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 11first strand
Strand 2
H
21 30anti-parallel
Strand 3
H
62 70anti-parallel
Strand 4
H
50 56anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
44 45first strand
Strand 2
H
35 41anti-parallel
Strand 3
H
78 84anti-parallel
Strand 4
H
91 94anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
103 104first strand
Strand 2
J
110 111anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il