Analysis of interatomic Contacts of Structural Units in PDB entry:
3M1C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3M1C entry

There are 2 chains in PDB entry 3M1C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 49PRO 797
B
 THR 24ASN 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 3M1C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
62 67Right-handed 310
Helix 2
2
A
69 73Right-handed 310
Helix 3
3
A
112 115Right-handed 310
Helix 4
4
A
150 156Right-handed alpha
Helix 5
5
A
210 216Right-handed alpha
Helix 6
6
A
217 219Right-handed 310
Helix 7
7
A
332 345Right-handed alpha
Helix 8
8
A
346 348Right-handed 310
Helix 9
9
A
351 365Right-handed alpha
Helix 10
10
A
375 401Right-handed alpha
Helix 11
11
A
405 426Right-handed alpha
Helix 12
12
A
430 434Right-handed 310
Helix 13
13
A
442 464Right-handed alpha
Helix 14
14
A
466 481Right-handed alpha
Helix 15
15
A
482 507Right-handed alpha
Helix 16
16
A
512 532Right-handed alpha
Helix 17
17
A
536 554Right-handed alpha
Helix 18
18
A
555 573Right-handed alpha
Helix 19
19
A
581 586Right-handed 310
Helix 20
20
A
587 592Right-handed 310
Helix 21
21
A
599 609Right-handed alpha
Helix 22
22
A
616 636Right-handed alpha
Helix 23
23
A
637 645Right-handed alpha
Helix 24
24
A
751 760Right-handed alpha
Helix 25
25
A
791 794Right-handed 310
Helix 26
26
B
35 41Right-handed alpha
Helix 27
27
B
63 67Right-handed 310
Helix 28
28
B
95 109Right-handed alpha
Helix 29
29
B
116 135Right-handed alpha
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There are 8 sheets in PDB entry 3M1C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 110first strand
Strand 2
A
89 95anti-parallel
Strand 3
B
69 73parallel
Strand 4
B
81 85anti-parallel
Strand 5
B
90 94anti-parallel
Strand 6
B
31 32anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
246 258anti-parallel
Strand 3
A
261 268anti-parallel
Strand 4
A
271 278anti-parallel
Strand 5
A
281 290anti-parallel
Strand 6
A
319 324anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 236first strand
Strand 2
A
246 258anti-parallel
Strand 3
A
435 439anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
403 404anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 297first strand
Strand 2
A
308 309anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
663 665first strand
Strand 2
A
672 676anti-parallel
Strand 3
A
698 702anti-parallel
Strand 4
A
683 687anti-parallel
Strand 5
A
708 711parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
714 715first strand
Strand 2
A
787 789parallel
Strand 3
A
777 781anti-parallel
Strand 4
A
733 737anti-parallel
Strand 5
A
743 748anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 56first strand
Strand 2
B
26 28parallel
Strand 3
B
198 199anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il