Analysis of interatomic Contacts of Structural Units in PDB entry:
3M1H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3M1H entry

There are 4 chains in PDB entry 3M1H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1427	GLY 1602
B	ALA 1427	SER 1601
C	GLY 1425	GLY 1602
D	ALA 1427	GLY 1602

There are 4 helices in PDB entry 3M1H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	1531	1535	Right-handed 310
Helix 2	2	B	1531	1535	Right-handed 310
Helix 3	3	C	1531	1535	Right-handed 310
Helix 4	4	D	1531	1535	Right-handed 310

There are 16 sheets in PDB entry 3M1H. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1428	1432	first strand
Strand 2	A	1591	1601	anti-parallel
Strand 3	A	1474	1477	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1428	1432	first strand
Strand 2	A	1591	1601	anti-parallel
Strand 3	A	1503	1511	anti-parallel
Strand 4	A	1566	1572	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1443	1446	first strand
Strand 2	A	1489	1493	anti-parallel
Strand 3	A	1578	1584	anti-parallel
Strand 4	A	1520	1526	anti-parallel
Strand 5	A	1540	1543	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1479	1480	first strand
Strand 2	A	1484	1485	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1428	1432	first strand
Strand 2	B	1591	1600	anti-parallel
Strand 3	B	1474	1477	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1428	1432	first strand
Strand 2	B	1591	1600	anti-parallel
Strand 3	B	1503	1511	anti-parallel
Strand 4	B	1566	1572	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1443	1446	first strand
Strand 2	B	1490	1493	anti-parallel
Strand 3	B	1578	1583	anti-parallel
Strand 4	B	1520	1526	anti-parallel
Strand 5	B	1538	1543	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1479	1480	first strand
Strand 2	B	1484	1485	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1428	1432	first strand
Strand 2	C	1591	1601	anti-parallel
Strand 3	C	1474	1477	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1428	1432	first strand
Strand 2	C	1591	1601	anti-parallel
Strand 3	C	1503	1511	anti-parallel
Strand 4	C	1566	1572	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1443	1446	first strand
Strand 2	C	1489	1493	anti-parallel
Strand 3	C	1578	1584	anti-parallel
Strand 4	C	1520	1526	anti-parallel
Strand 5	C	1540	1543	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1479	1480	first strand
Strand 2	C	1484	1485	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1428	1432	first strand
Strand 2	D	1591	1601	anti-parallel
Strand 3	D	1474	1477	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1428	1432	first strand
Strand 2	D	1591	1601	anti-parallel
Strand 3	D	1503	1511	anti-parallel
Strand 4	D	1566	1572	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1443	1446	first strand
Strand 2	D	1489	1493	anti-parallel
Strand 3	D	1578	1584	anti-parallel
Strand 4	D	1520	1526	anti-parallel
Strand 5	D	1540	1543	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1479	1480	first strand
Strand 2	D	1484	1485	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3M1H

Analysis of interatomic Contacts of Structural Units in PDB entry:
3M1H