Analysis of interatomic Contacts of Structural Units in PDB entry:
3M1M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3M1M entry

There is 1 chain in PDB entry 3M1M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 40ALA 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3M1M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 53Right-handed alpha
Helix 2
2
A
71 77Right-handed 310
Helix 3
3
A
81 94Right-handed alpha
Helix 4
4
A
103 105Right-handed 310
Helix 5
5
A
114 123Right-handed alpha
Helix 6
6
A
123 134Right-handed alpha
Helix 7
7
A
189 191Right-handed 310
Helix 8
8
A
220 233Right-handed alpha
Helix 9
9
A
240 248Right-handed alpha
Helix 10
10
A
261 271Right-handed alpha
Helix 11
11
A
275 285Right-handed alpha
Helix 12
12
A
289 297Right-handed alpha
Helix 13
13
A
308 323Right-handed alpha
Helix 14
14
A
327 335Right-handed alpha
Helix 15
15
A
345 369Right-handed alpha
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There are 3 sheets in PDB entry 3M1M. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
97 101anti-parallel
Strand 3
A
178 180anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
136 138anti-parallel
Strand 3
A
144 149anti-parallel
Strand 4
A
107 112anti-parallel
Strand 5
A
167 173anti-parallel
Strand 6
A
158 164anti-parallel
Strand 7
A
237 239anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
A
204 206anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il