Analysis of interatomic Contacts of Structural Units in PDB entry:
3M1R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3M1R entry

There are 5 chains in PDB entry 3M1R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1PHE 318
B
 MSE 1PRO 317
C
 ASP 2PRO 317
D
 SER -2PHE 318
E
 ASP 2LYS 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 89 helices in PDB entry 3M1R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 24Right-handed 310
Helix 2
2
A
53 55Right-handed 310
Helix 3
3
A
56 68Right-handed alpha
Helix 4
4
A
96 115Right-handed alpha
Helix 5
5
A
128 142Right-handed alpha
Helix 6
6
A
167 175Right-handed alpha
Helix 7
7
A
179 181Right-handed 310
Helix 8
8
A
194 204Right-handed alpha
Helix 9
9
A
211 218Right-handed alpha
Helix 10
10
A
218 232Right-handed alpha
Helix 11
11
A
244 246Right-handed 310
Helix 12
12
A
263 276Right-handed alpha
Helix 13
13
A
289 293Right-handed 310
Helix 14
14
A
296 316Right-handed alpha
Helix 15
15
B
21 24Right-handed 310
Helix 16
16
B
53 55Right-handed 310
Helix 17
17
B
56 67Right-handed alpha
Helix 18
18
B
96 115Right-handed alpha
Helix 19
19
B
126 128Right-handed 310
Helix 20
20
B
129 142Right-handed alpha
Helix 21
21
B
167 175Right-handed alpha
Helix 22
22
B
179 181Right-handed 310
Helix 23
23
B
194 204Right-handed alpha
Helix 24
24
B
211 218Right-handed alpha
Helix 25
25
B
218 232Right-handed alpha
Helix 26
26
B
244 246Right-handed 310
Helix 27
27
B
263 275Right-handed alpha
Helix 28
28
B
289 293Right-handed 310
Helix 29
29
B
296 315Right-handed alpha
Helix 30
30
C
21 24Right-handed 310
Helix 31
31
C
53 55Right-handed 310
Helix 32
32
C
56 67Right-handed alpha
Helix 33
33
C
96 115Right-handed alpha
Helix 34
34
C
126 128Right-handed 310
Helix 35
35
C
129 142Right-handed alpha
Helix 36
36
C
167 175Right-handed alpha
Helix 37
37
C
179 181Right-handed 310
Helix 38
38
C
194 204Right-handed alpha
Helix 39
39
C
211 218Right-handed alpha
Helix 40
40
C
218 233Right-handed alpha
Helix 41
41
C
244 246Right-handed 310
Helix 42
42
C
263 276Right-handed alpha
Helix 43
43
C
289 293Right-handed 310
Helix 44
44
C
296 316Right-handed alpha
Helix 45
45
D
21 24Right-handed 310
Helix 46
46
D
53 55Right-handed 310
Helix 47
47
D
56 67Right-handed alpha
Helix 48
48
D
96 115Right-handed alpha
Helix 49
49
D
126 128Right-handed 310
Helix 50
50
D
129 139Right-handed alpha
Helix 51
51
D
167 176Right-handed alpha
Helix 52
52
D
179 181Right-handed 310
Helix 53
53
D
194 204Right-handed alpha
Helix 54
54
D
211 218Right-handed alpha
Helix 55
55
D
218 232Right-handed alpha
Helix 56
56
D
244 246Right-handed 310
Helix 57
57
D
263 276Right-handed alpha
Helix 58
58
D
289 293Right-handed 310
Helix 59
59
D
296 316Right-handed alpha
Helix 60
60
E
21 25Right-handed alpha
Helix 61
61
E
53 55Right-handed 310
Helix 62
62
E
56 67Right-handed alpha
Helix 63
63
E
96 115Right-handed alpha
Helix 64
64
E
126 128Right-handed 310
Helix 65
65
E
129 142Right-handed alpha
Helix 66
66
E
167 175Right-handed alpha
Helix 67
67
E
179 181Right-handed 310
Helix 68
68
E
194 204Right-handed alpha
Helix 69
69
E
211 218Right-handed alpha
Helix 70
70
E
218 233Right-handed alpha
Helix 71
71
E
244 246Right-handed 310
Helix 72
72
E
263 277Right-handed alpha
Helix 73
73
E
289 293Right-handed 310
Helix 74
74
E
296 315Right-handed alpha
Helix 75
75
F
21 24Right-handed 310
Helix 76
76
F
53 55Right-handed 310
Helix 77
77
F
56 67Right-handed alpha
Helix 78
78
F
96 115Right-handed alpha
Helix 79
79
F
126 128Right-handed 310
Helix 80
80
F
129 142Right-handed alpha
Helix 81
81
F
167 175Right-handed alpha
Helix 82
82
F
179 181Right-handed 310
Helix 83
83
F
194 204Right-handed alpha
Helix 84
84
F
211 218Right-handed alpha
Helix 85
85
F
218 233Right-handed alpha
Helix 86
86
F
244 246Right-handed 310
Helix 87
87
F
263 275Right-handed alpha
Helix 88
88
F
289 293Right-handed 310
Helix 89
89
F
296 316Right-handed alpha
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There are 17 sheets in PDB entry 3M1R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
F
84 90anti-parallel
Strand 3
F
26 28parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
F
84 90anti-parallel
Strand 3
F
36 42parallel
Strand 4
F
118 124parallel
Strand 5
F
280 286parallel
Strand 6
F
236 242parallel
Strand 7
F
144 149parallel
Strand 8
F
183 188parallel
Strand 9
F
207 210parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
84 90parallel
Strand 3
A
36 42parallel
Strand 4
A
118 124parallel
Strand 5
A
280 286parallel
Strand 6
A
236 242parallel
Strand 7
A
144 149parallel
Strand 8
A
183 188parallel
Strand 9
A
207 210parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
84 90parallel
Strand 3
F
7 8anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
77 78anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 8first strand
Strand 2
D
84 90anti-parallel
Strand 3
D
26 28parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 8first strand
Strand 2
D
84 90anti-parallel
Strand 3
D
36 42parallel
Strand 4
D
118 124parallel
Strand 5
D
280 286parallel
Strand 6
D
236 242parallel
Strand 7
D
144 149parallel
Strand 8
D
183 188parallel
Strand 9
D
207 210parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
84 90parallel
Strand 3
B
36 42parallel
Strand 4
B
118 124parallel
Strand 5
B
280 286parallel
Strand 6
B
236 242parallel
Strand 7
B
144 149parallel
Strand 8
B
183 188parallel
Strand 9
B
207 210parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
84 90parallel
Strand 3
D
7 8anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
77 78anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 8first strand
Strand 2
E
84 90anti-parallel
Strand 3
E
26 28parallel
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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 8first strand
Strand 2
E
84 90anti-parallel
Strand 3
E
36 42parallel
Strand 4
E
118 124parallel
Strand 5
E
280 286parallel
Strand 6
E
236 242parallel
Strand 7
E
144 149parallel
Strand 8
E
183 188parallel
Strand 9
E
207 210parallel
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There are 9 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 28first strand
Strand 2
C
84 90parallel
Strand 3
C
36 42parallel
Strand 4
C
118 124parallel
Strand 5
C
280 286parallel
Strand 6
C
236 242parallel
Strand 7
C
144 149parallel
Strand 8
C
183 188parallel
Strand 9
C
207 210parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 28first strand
Strand 2
C
84 90parallel
Strand 3
E
7 8anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 72first strand
Strand 2
C
77 78anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
71 72first strand
Strand 2
D
77 78anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
71 72first strand
Strand 2
F
77 78anti-parallel
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