Analysis of interatomic Contacts of Structural Units in PDB entry:
3M1V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3M1V entry

There are 16 chains in PDB entry 3M1V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	LYS 256
A	ALA 258	ARG 270
A	ALA 272	SER 399
A	ARG 401	TYR 444
A	TYR 446	GLN 451
A	GLY 453	ALA 549
B	ALA 2	ILE 443
C	ALA 2	ASN 247
D	ALA 2	LYS 256
D	ALA 258	ARG 270
D	ALA 272	SER 399
D	ARG 401	TYR 444
D	TYR 446	GLN 451
D	GLY 453	ALA 549
E	ALA 2	ILE 443
F	ALA 2	ASN 247

There are141 helices in PDB entry 3M1V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	6	14	Right-handed alpha
Helix 2	2	A	29	33	Right-handed 310
Helix 3	3	A	34	52	Right-handed alpha
Helix 4	4	A	84	90	Right-handed 310
Helix 5	5	A	91	103	Right-handed alpha
Helix 6	6	A	109	119	Right-handed alpha
Helix 7	7	A	125	140	Right-handed alpha
Helix 8	8	A	169	176	Right-handed alpha
Helix 9	9	A	177	181	Right-handed 310
Helix 10	10	A	183	188	Right-handed alpha
Helix 11	11	A	189	201	Right-handed alpha
Helix 12	12	A	211	218	Right-handed alpha
Helix 13	13	A	221	240	Right-handed alpha
Helix 14	14	A	247	257	Right-handed alpha
Helix 15	15	A	268	272	Right-handed 310
Helix 16	16	A	277	281	Right-handed 310
Helix 17	17	A	282	290	Right-handed alpha
Helix 18	18	A	291	296	Right-handed alpha
Helix 19	19	A	299	317	Right-handed alpha
Helix 20	20	A	330	336	Right-handed alpha
Helix 21	21	A	341	358	Right-handed alpha
Helix 22	22	A	366	388	Right-handed alpha
Helix 23	23	A	388	395	Right-handed alpha
Helix 24	24	A	397	418	Right-handed alpha
Helix 25	25	A	419	439	Right-handed alpha
Helix 26	26	A	447	458	Right-handed alpha
Helix 27	27	A	467	471	Right-handed 310
Helix 28	28	A	475	479	Right-handed 310
Helix 29	29	A	484	500	Right-handed alpha
Helix 30	30	A	506	513	Right-handed alpha
Helix 31	31	A	524	534	Right-handed alpha
Helix 32	32	A	543	547	Right-handed 310
Helix 33	33	B	25	28	Right-handed 310
Helix 34	34	B	32	44	Right-handed alpha
Helix 35	35	B	50	60	Right-handed alpha
Helix 36	36	B	78	80	Right-handed 310
Helix 37	37	B	81	94	Right-handed alpha
Helix 38	38	B	117	123	Right-handed alpha
Helix 39	39	B	128	147	Right-handed alpha
Helix 40	40	B	152	162	Right-handed alpha
Helix 41	41	B	181	185	Right-handed 310
Helix 42	42	B	190	194	Right-handed 310
Helix 43	43	B	196	204	Right-handed alpha
Helix 44	44	B	207	226	Right-handed alpha
Helix 45	45	B	230	232	Right-handed 310
Helix 46	46	B	233	246	Right-handed alpha
Helix 47	47	B	247	249	Right-handed 310
Helix 48	48	B	250	260	Right-handed alpha
Helix 49	49	B	264	279	Right-handed alpha
Helix 50	50	B	298	322	Right-handed alpha
Helix 51	51	B	323	325	Right-handed 310
Helix 52	52	B	326	343	Right-handed alpha
Helix 53	53	B	346	349	Right-handed 310
Helix 54	54	B	350	362	Right-handed alpha
Helix 55	55	B	371	375	Right-handed 310
Helix 56	56	B	389	399	Right-handed alpha
Helix 57	57	B	407	412	Right-handed alpha
Helix 58	58	B	412	420	Right-handed alpha
Helix 59	59	B	422	427	Right-handed alpha
Helix 60	60	B	427	439	Right-handed alpha
Helix 61	61	C	9	20	Right-handed alpha
Helix 62	62	C	32	41	Right-handed alpha
Helix 63	63	C	55	59	Right-handed 310
Helix 64	64	C	64	70	Right-handed alpha
Helix 65	65	C	73	79	Right-handed alpha
Helix 66	66	C	97	109	Right-handed alpha
Helix 67	67	C	127	140	Right-handed alpha
Helix 68	68	C	206	214	Right-handed alpha
Helix 69	69	C	223	226	Right-handed 310
Helix 70	70	C	227	247	Right-handed alpha
Helix 71	71	D	6	14	Right-handed alpha
Helix 72	72	D	29	33	Right-handed 310
Helix 73	73	D	34	52	Right-handed alpha
Helix 74	74	D	84	90	Right-handed 310
Helix 75	75	D	91	103	Right-handed alpha
Helix 76	76	D	109	119	Right-handed alpha
Helix 77	77	D	125	140	Right-handed alpha
Helix 78	78	D	169	176	Right-handed alpha
Helix 79	79	D	177	181	Right-handed 310
Helix 80	80	D	183	188	Right-handed alpha
Helix 81	81	D	189	201	Right-handed alpha
Helix 82	82	D	211	218	Right-handed alpha
Helix 83	83	D	221	240	Right-handed alpha
Helix 84	84	D	247	257	Right-handed alpha
Helix 85	85	D	268	272	Right-handed 310
Helix 86	86	D	277	281	Right-handed 310
Helix 87	87	D	282	290	Right-handed alpha
Helix 88	88	D	291	295	Right-handed 310
Helix 89	89	D	299	317	Right-handed alpha
Helix 90	90	D	330	336	Right-handed alpha
Helix 91	91	D	341	358	Right-handed alpha
Helix 92	92	D	366	388	Right-handed alpha
Helix 93	93	D	388	395	Right-handed alpha
Helix 94	94	D	397	418	Right-handed alpha
Helix 95	95	D	419	439	Right-handed alpha
Helix 96	96	D	447	458	Right-handed alpha
Helix 97	97	D	467	471	Right-handed 310
Helix 98	98	D	475	479	Right-handed 310
Helix 99	99	D	484	500	Right-handed alpha
Helix 100	100	D	506	513	Right-handed alpha
Helix 101	101	D	524	534	Right-handed alpha
Helix 102	102	D	543	547	Right-handed 310
Helix 103	103	E	25	28	Right-handed 310
Helix 104	104	E	32	44	Right-handed alpha
Helix 105	105	E	49	60	Right-handed alpha
Helix 106	106	E	78	80	Right-handed 310
Helix 107	107	E	81	94	Right-handed alpha
Helix 108	108	E	107	110	Right-handed 310
Helix 109	109	E	117	123	Right-handed alpha
Helix 110	110	E	128	147	Right-handed alpha
Helix 111	111	E	152	162	Right-handed alpha
Helix 112	112	E	181	185	Right-handed 310
Helix 113	113	E	190	194	Right-handed 310
Helix 114	114	E	196	204	Right-handed alpha
Helix 115	115	E	207	226	Right-handed alpha
Helix 116	116	E	230	232	Right-handed 310
Helix 117	117	E	233	246	Right-handed alpha
Helix 118	118	E	247	249	Right-handed 310
Helix 119	119	E	250	260	Right-handed alpha
Helix 120	120	E	264	279	Right-handed alpha
Helix 121	121	E	298	322	Right-handed alpha
Helix 122	122	E	323	325	Right-handed 310
Helix 123	123	E	326	343	Right-handed alpha
Helix 124	124	E	346	349	Right-handed 310
Helix 125	125	E	350	362	Right-handed alpha
Helix 126	126	E	371	375	Right-handed 310
Helix 127	127	E	389	399	Right-handed alpha
Helix 128	128	E	407	412	Right-handed alpha
Helix 129	129	E	412	420	Right-handed alpha
Helix 130	130	E	422	427	Right-handed alpha
Helix 131	131	E	427	440	Right-handed alpha
Helix 132	132	F	9	20	Right-handed alpha
Helix 133	133	F	32	41	Right-handed alpha
Helix 134	134	F	55	59	Right-handed 310
Helix 135	135	F	64	70	Right-handed alpha
Helix 136	136	F	73	79	Right-handed alpha
Helix 137	137	F	97	109	Right-handed alpha
Helix 138	138	F	127	140	Right-handed alpha
Helix 139	139	F	206	214	Right-handed alpha
Helix 140	140	F	223	226	Right-handed 310
Helix 141	141	F	227	247	Right-handed alpha

There are 14 sheets in PDB entry 3M1V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	73	first strand
Strand 2	A	80	82	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	167	first strand
Strand 2	A	204	209	anti-parallel
Strand 3	A	104	108	anti-parallel
Strand 4	A	260	261	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	11	first strand
Strand 2	B	17	23	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	106	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	45	49	anti-parallel
Strand 4	B	175	176	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	288	first strand
Strand 2	B	291	295	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	116	first strand
Strand 2	C	121	126	anti-parallel
Strand 3	C	82	89	anti-parallel
Strand 4	C	148	150	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	177	first strand
Strand 2	C	184	188	anti-parallel
Strand 3	C	194	200	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	73	first strand
Strand 2	D	80	82	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	167	first strand
Strand 2	D	204	209	anti-parallel
Strand 3	D	104	108	anti-parallel
Strand 4	D	260	261	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	11	first strand
Strand 2	E	17	23	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	106	first strand
Strand 2	E	111	115	anti-parallel
Strand 3	E	45	48	anti-parallel
Strand 4	E	175	176	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	288	first strand
Strand 2	E	291	295	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	116	first strand
Strand 2	F	121	126	anti-parallel
Strand 3	F	82	89	anti-parallel
Strand 4	F	148	150	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	175	177	first strand
Strand 2	F	184	188	anti-parallel
Strand 3	F	194	200	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3M1V

Analysis of interatomic Contacts of Structural Units in PDB entry:
3M1V