Analysis of interatomic Contacts of Structural Units in PDB entry:
3M1Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3M1Y entry

There are 4 chains in PDB entry 3M1Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0LEU 206
B
 GLN 2ILE 207
C
 SER 0GLU 208
D
 SER 0LEU 206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 3M1Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 26Right-handed alpha
Helix 2
2
A
28 33Right-handed alpha
Helix 3
3
A
45 56Right-handed alpha
Helix 4
4
A
61 70Right-handed alpha
Helix 5
5
A
77 87Right-handed alpha
Helix 6
6
A
100 111Right-handed alpha
Helix 7
7
A
139 153Right-handed alpha
Helix 8
8
A
165 167Right-handed 310
Helix 9
9
A
168 173Right-handed alpha
Helix 10
10
A
184 189Right-handed alpha
Helix 11
11
A
199 204Right-handed 310
Helix 12
12
B
17 26Right-handed alpha
Helix 13
13
B
28 40Right-handed alpha
Helix 14
14
B
45 56Right-handed alpha
Helix 15
15
B
61 70Right-handed alpha
Helix 16
16
B
77 88Right-handed alpha
Helix 17
17
B
100 110Right-handed alpha
Helix 18
18
B
139 153Right-handed alpha
Helix 19
19
B
155 157Right-handed 310
Helix 20
20
B
165 167Right-handed 310
Helix 21
21
B
168 173Right-handed alpha
Helix 22
22
B
184 191Right-handed alpha
Helix 23
23
B
199 207Right-handed 310
Helix 24
24
C
17 27Right-handed alpha
Helix 25
25
C
28 39Right-handed alpha
Helix 26
26
C
45 55Right-handed alpha
Helix 27
27
C
56 58Right-handed 310
Helix 28
28
C
62 70Right-handed alpha
Helix 29
29
C
77 88Right-handed alpha
Helix 30
30
C
100 111Right-handed alpha
Helix 31
31
C
139 153Right-handed alpha
Helix 32
32
C
168 173Right-handed alpha
Helix 33
33
C
184 191Right-handed alpha
Helix 34
34
C
199 207Right-handed 310
Helix 35
35
D
17 26Right-handed alpha
Helix 36
36
D
28 41Right-handed alpha
Helix 37
37
D
45 56Right-handed alpha
Helix 38
38
D
61 70Right-handed alpha
Helix 39
39
D
78 88Right-handed alpha
Helix 40
40
D
100 110Right-handed alpha
Helix 41
41
D
139 153Right-handed alpha
Helix 42
42
D
155 157Right-handed 310
Helix 43
43
D
165 167Right-handed 310
Helix 44
44
D
168 173Right-handed alpha
Helix 45
45
D
184 189Right-handed alpha
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There are 4 sheets in PDB entry 3M1Y. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 133first strand
Strand 2
A
114 123anti-parallel
Strand 3
A
90 99parallel
Strand 4
A
3 8parallel
Strand 5
A
159 163parallel
Strand 6
A
177 181parallel
Strand 7
A
193 195parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 133first strand
Strand 2
B
114 123anti-parallel
Strand 3
B
90 99parallel
Strand 4
B
3 8parallel
Strand 5
B
159 163parallel
Strand 6
B
177 181parallel
Strand 7
B
193 195parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 133first strand
Strand 2
C
114 123anti-parallel
Strand 3
C
90 99parallel
Strand 4
C
3 8parallel
Strand 5
C
159 163parallel
Strand 6
C
177 181parallel
Strand 7
C
193 195parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
126 133first strand
Strand 2
D
114 123anti-parallel
Strand 3
D
90 99parallel
Strand 4
D
3 8parallel
Strand 5
D
159 163parallel
Strand 6
D
177 181parallel
Strand 7
D
193 195parallel
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