Analysis of interatomic Contacts of Structural Units in PDB entry:
3M2V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3M2V entry

There are 16 chains in PDB entry 3M2V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	LYS 256
A	ALA 258	ARG 270
A	ALA 272	SER 399
A	ARG 401	TYR 444
A	TYR 446	GLN 451
A	GLY 453	ALA 549
B	ALA 2	ILE 443
C	ALA 2	GLU 249
D	ALA 2	LYS 256
D	ALA 258	ARG 270
D	ALA 272	SER 399
D	ARG 401	TYR 444
D	TYR 446	GLN 451
D	GLY 453	ALA 549
E	ALA 2	ILE 443
F	ALA 2	LEU 248

There are142 helices in PDB entry 3M2V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	6	14	Right-handed alpha
Helix 2	2	A	29	33	Right-handed 310
Helix 3	3	A	34	52	Right-handed alpha
Helix 4	4	A	84	90	Right-handed 310
Helix 5	5	A	91	103	Right-handed alpha
Helix 6	6	A	109	119	Right-handed alpha
Helix 7	7	A	125	140	Right-handed alpha
Helix 8	8	A	169	176	Right-handed alpha
Helix 9	9	A	177	181	Right-handed 310
Helix 10	10	A	183	188	Right-handed alpha
Helix 11	11	A	189	201	Right-handed alpha
Helix 12	12	A	211	218	Right-handed alpha
Helix 13	13	A	221	239	Right-handed alpha
Helix 14	14	A	245	257	Right-handed alpha
Helix 15	15	A	268	272	Right-handed 310
Helix 16	16	A	277	281	Right-handed 310
Helix 17	17	A	282	290	Right-handed alpha
Helix 18	18	A	291	295	Right-handed 310
Helix 19	19	A	299	317	Right-handed alpha
Helix 20	20	A	330	336	Right-handed alpha
Helix 21	21	A	341	358	Right-handed alpha
Helix 22	22	A	366	388	Right-handed alpha
Helix 23	23	A	388	395	Right-handed alpha
Helix 24	24	A	397	418	Right-handed alpha
Helix 25	25	A	419	439	Right-handed alpha
Helix 26	26	A	447	458	Right-handed alpha
Helix 27	27	A	467	471	Right-handed 310
Helix 28	28	A	475	479	Right-handed 310
Helix 29	29	A	484	500	Right-handed alpha
Helix 30	30	A	506	513	Right-handed alpha
Helix 31	31	A	524	534	Right-handed alpha
Helix 32	32	A	543	547	Right-handed 310
Helix 33	33	B	25	28	Right-handed 310
Helix 34	34	B	32	44	Right-handed alpha
Helix 35	35	B	50	60	Right-handed alpha
Helix 36	36	B	81	94	Right-handed alpha
Helix 37	37	B	117	122	Right-handed alpha
Helix 38	38	B	128	147	Right-handed alpha
Helix 39	39	B	152	162	Right-handed alpha
Helix 40	40	B	181	185	Right-handed 310
Helix 41	41	B	190	194	Right-handed 310
Helix 42	42	B	196	204	Right-handed alpha
Helix 43	43	B	207	226	Right-handed alpha
Helix 44	44	B	230	232	Right-handed 310
Helix 45	45	B	233	246	Right-handed alpha
Helix 46	46	B	247	249	Right-handed 310
Helix 47	47	B	250	260	Right-handed alpha
Helix 48	48	B	264	279	Right-handed alpha
Helix 49	49	B	298	322	Right-handed alpha
Helix 50	50	B	323	325	Right-handed 310
Helix 51	51	B	326	343	Right-handed alpha
Helix 52	52	B	346	349	Right-handed 310
Helix 53	53	B	350	362	Right-handed alpha
Helix 54	54	B	371	375	Right-handed 310
Helix 55	55	B	389	399	Right-handed alpha
Helix 56	56	B	407	412	Right-handed alpha
Helix 57	57	B	412	420	Right-handed alpha
Helix 58	58	B	422	427	Right-handed alpha
Helix 59	59	B	427	440	Right-handed alpha
Helix 60	60	B	441	443	Right-handed 310
Helix 61	61	C	9	20	Right-handed alpha
Helix 62	62	C	32	41	Right-handed alpha
Helix 63	63	C	55	59	Right-handed 310
Helix 64	64	C	64	70	Right-handed alpha
Helix 65	65	C	73	79	Right-handed alpha
Helix 66	66	C	97	109	Right-handed alpha
Helix 67	67	C	127	140	Right-handed alpha
Helix 68	68	C	206	214	Right-handed alpha
Helix 69	69	C	223	226	Right-handed 310
Helix 70	70	C	227	248	Right-handed alpha
Helix 71	71	D	6	14	Right-handed alpha
Helix 72	72	D	29	33	Right-handed 310
Helix 73	73	D	34	52	Right-handed alpha
Helix 74	74	D	84	90	Right-handed 310
Helix 75	75	D	91	103	Right-handed alpha
Helix 76	76	D	109	119	Right-handed alpha
Helix 77	77	D	125	140	Right-handed alpha
Helix 78	78	D	154	159	Right-handed 310
Helix 79	79	D	169	176	Right-handed alpha
Helix 80	80	D	177	181	Right-handed 310
Helix 81	81	D	183	188	Right-handed alpha
Helix 82	82	D	189	201	Right-handed alpha
Helix 83	83	D	211	218	Right-handed alpha
Helix 84	84	D	221	239	Right-handed alpha
Helix 85	85	D	247	257	Right-handed alpha
Helix 86	86	D	268	272	Right-handed 310
Helix 87	87	D	277	281	Right-handed 310
Helix 88	88	D	282	290	Right-handed alpha
Helix 89	89	D	291	296	Right-handed alpha
Helix 90	90	D	299	317	Right-handed alpha
Helix 91	91	D	330	336	Right-handed alpha
Helix 92	92	D	341	358	Right-handed alpha
Helix 93	93	D	366	388	Right-handed alpha
Helix 94	94	D	388	395	Right-handed alpha
Helix 95	95	D	397	418	Right-handed alpha
Helix 96	96	D	419	439	Right-handed alpha
Helix 97	97	D	447	458	Right-handed alpha
Helix 98	98	D	467	471	Right-handed 310
Helix 99	99	D	475	479	Right-handed 310
Helix 100	100	D	484	500	Right-handed alpha
Helix 101	101	D	506	513	Right-handed alpha
Helix 102	102	D	524	534	Right-handed alpha
Helix 103	103	D	543	547	Right-handed 310
Helix 104	104	E	25	28	Right-handed 310
Helix 105	105	E	32	44	Right-handed alpha
Helix 106	106	E	49	60	Right-handed alpha
Helix 107	107	E	78	80	Right-handed 310
Helix 108	108	E	81	94	Right-handed alpha
Helix 109	109	E	107	110	Right-handed 310
Helix 110	110	E	117	123	Right-handed alpha
Helix 111	111	E	128	147	Right-handed alpha
Helix 112	112	E	149	162	Right-handed alpha
Helix 113	113	E	181	185	Right-handed 310
Helix 114	114	E	190	194	Right-handed 310
Helix 115	115	E	196	204	Right-handed alpha
Helix 116	116	E	207	226	Right-handed alpha
Helix 117	117	E	230	232	Right-handed 310
Helix 118	118	E	233	246	Right-handed alpha
Helix 119	119	E	247	249	Right-handed 310
Helix 120	120	E	250	260	Right-handed alpha
Helix 121	121	E	264	279	Right-handed alpha
Helix 122	122	E	298	322	Right-handed alpha
Helix 123	123	E	323	325	Right-handed 310
Helix 124	124	E	326	343	Right-handed alpha
Helix 125	125	E	346	349	Right-handed 310
Helix 126	126	E	350	362	Right-handed alpha
Helix 127	127	E	371	375	Right-handed 310
Helix 128	128	E	389	399	Right-handed alpha
Helix 129	129	E	407	412	Right-handed alpha
Helix 130	130	E	412	420	Right-handed alpha
Helix 131	131	E	422	427	Right-handed alpha
Helix 132	132	E	427	440	Right-handed alpha
Helix 133	133	E	441	443	Right-handed 310
Helix 134	134	F	9	20	Right-handed alpha
Helix 135	135	F	32	41	Right-handed alpha
Helix 136	136	F	64	70	Right-handed alpha
Helix 137	137	F	73	79	Right-handed alpha
Helix 138	138	F	97	109	Right-handed alpha
Helix 139	139	F	127	140	Right-handed alpha
Helix 140	140	F	206	214	Right-handed alpha
Helix 141	141	F	223	226	Right-handed 310
Helix 142	142	F	227	248	Right-handed alpha

There are 14 sheets in PDB entry 3M2V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	73	first strand
Strand 2	A	80	82	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	167	first strand
Strand 2	A	204	209	anti-parallel
Strand 3	A	104	108	anti-parallel
Strand 4	A	260	261	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	11	first strand
Strand 2	B	17	23	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	106	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	45	49	anti-parallel
Strand 4	B	175	176	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	288	first strand
Strand 2	B	291	295	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	116	first strand
Strand 2	C	121	126	anti-parallel
Strand 3	C	82	89	anti-parallel
Strand 4	C	148	150	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	177	first strand
Strand 2	C	184	188	anti-parallel
Strand 3	C	194	202	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	73	first strand
Strand 2	D	80	82	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	167	first strand
Strand 2	D	204	209	anti-parallel
Strand 3	D	104	108	anti-parallel
Strand 4	D	260	261	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	11	first strand
Strand 2	E	17	23	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	106	first strand
Strand 2	E	111	115	anti-parallel
Strand 3	E	45	48	anti-parallel
Strand 4	E	175	176	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	288	first strand
Strand 2	E	291	295	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	116	first strand
Strand 2	F	121	126	anti-parallel
Strand 3	F	82	89	anti-parallel
Strand 4	F	148	150	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	175	178	first strand
Strand 2	F	183	188	anti-parallel
Strand 3	F	194	202	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3M2V

Analysis of interatomic Contacts of Structural Units in PDB entry:
3M2V