Analysis of interatomic Contacts of Structural Units in PDB entry:
3M5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3M5C entry

There is 1 chain in PDB entry 3M5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3VAL 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3M5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 12Right-handed 310
Helix 2
2
A
13 30Right-handed alpha
Helix 3
3
A
50 63Right-handed alpha
Helix 4
4
A
95 106Right-handed alpha
Helix 5
5
A
119 124Right-handed alpha
Helix 6
6
A
126 136Right-handed alpha
Helix 7
7
A
148 164Right-handed alpha
Helix 8
8
A
186 199Right-handed alpha
Helix 9
9
A
209 213Right-handed 310
Helix 10
10
A
215 230Right-handed alpha
Helix 11
11
A
238 244Right-handed alpha
Helix 12
12
A
256 260Right-handed 310
Helix 13
13
A
265 272Right-handed alpha
Helix 14
14
A
273 277Right-handed 310
Helix 15
15
A
279 284Right-handed alpha
Helix 16
16
A
304 310Right-handed alpha
Helix 17
17
A
314 334Right-handed alpha
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There are 3 sheets in PDB entry 3M5C. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 70first strand
Strand 2
A
40 45parallel
Strand 3
A
108 112parallel
Strand 4
A
140 142parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
93 94parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 236first strand
Strand 2
A
202 206parallel
Strand 3
A
172 177parallel
Strand 4
A
248 252parallel
Strand 5
A
290 292parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il