Analysis of interatomic Contacts of Structural Units in PDB entry:
3M5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3M5M entry

There are 3 chains in PDB entry 3M5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 983MET 1179
B
 MET 983MET 1179
C
 PHE 1CYS 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3M5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1012 1023Right-handed alpha
Helix 2
2
A
1055 1060Right-handed alpha
Helix 3
3
A
1133 1136Right-handed 310
Helix 4
4
A
1172 1179Right-handed alpha
Helix 5
5
B
1012 1023Right-handed alpha
Helix 6
6
B
1055 1060Right-handed alpha
Helix 7
7
B
1133 1135Right-handed 310
Helix 8
8
B
1172 1179Right-handed alpha
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There are 4 sheets in PDB entry 3M5M. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1006 1009first strand
Strand 2
A
993 999anti-parallel
Strand 3
A
1033 1037anti-parallel
Strand 4
A
1042 1048anti-parallel
Strand 5
A
1051 1054anti-parallel
Strand 6
A
1082 1086anti-parallel
Strand 7
A
1075 1077anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1103 1107first strand
Strand 2
A
1113 1118anti-parallel
Strand 3
A
1123 1131anti-parallel
Strand 4
A
1163 1171anti-parallel
Strand 5
A
1150 1160anti-parallel
Strand 6
A
1142 1144anti-parallel
Strand 7
A
1103 1107anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1006 1009first strand
Strand 2
B
993 999anti-parallel
Strand 3
B
1033 1037anti-parallel
Strand 4
B
1042 1048anti-parallel
Strand 5
B
1051 1054anti-parallel
Strand 6
B
1082 1086anti-parallel
Strand 7
B
1075 1077anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 6first strand
Strand 2
B
1150 1160anti-parallel
Strand 3
B
1163 1171anti-parallel
Strand 4
B
1123 1131anti-parallel
Strand 5
B
1113 1120anti-parallel
Strand 6
B
1103 1107anti-parallel
Strand 7
B
1142 1144anti-parallel
Strand 8
B
1150 1160anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il