Analysis of interatomic Contacts of Structural Units in PDB entry:
3M5W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3M5W entry

There are 2 chains in PDB entry 3M5W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0LEU 319
B
 ASN -1LEU 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3M5W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 21Right-handed alpha
Helix 2
2
A
21 28Right-handed alpha
Helix 3
3
A
42 47Right-handed alpha
Helix 4
4
A
49 67Right-handed alpha
Helix 5
5
A
80 82Right-handed 310
Helix 6
6
A
83 95Right-handed alpha
Helix 7
7
A
97 103Right-handed alpha
Helix 8
8
A
104 109Right-handed alpha
Helix 9
9
A
118 135Right-handed alpha
Helix 10
10
A
143 145Right-handed 310
Helix 11
11
A
146 165Right-handed alpha
Helix 12
12
A
191 195Right-handed 310
Helix 13
13
A
203 213Right-handed alpha
Helix 14
14
A
230 237Right-handed alpha
Helix 15
15
A
238 240Right-handed 310
Helix 16
16
A
241 255Right-handed alpha
Helix 17
17
A
258 274Right-handed alpha
Helix 18
18
A
274 287Right-handed alpha
Helix 19
19
A
287 318Right-handed alpha
Helix 20
20
B
14 21Right-handed alpha
Helix 21
21
B
21 29Right-handed alpha
Helix 22
22
B
39 47Right-handed alpha
Helix 23
23
B
49 68Right-handed alpha
Helix 24
24
B
80 82Right-handed 310
Helix 25
25
B
83 94Right-handed alpha
Helix 26
26
B
97 103Right-handed alpha
Helix 27
27
B
104 114Right-handed alpha
Helix 28
28
B
118 135Right-handed alpha
Helix 29
29
B
146 165Right-handed alpha
Helix 30
30
B
203 213Right-handed alpha
Helix 31
31
B
226 229Right-handed 310
Helix 32
32
B
230 237Right-handed alpha
Helix 33
33
B
238 240Right-handed 310
Helix 34
34
B
241 255Right-handed alpha
Helix 35
35
B
258 274Right-handed alpha
Helix 36
36
B
274 287Right-handed alpha
Helix 37
37
B
287 318Right-handed alpha
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There are 4 sheets in PDB entry 3M5W. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
35 38parallel
Strand 3
A
75 78parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 141first strand
Strand 2
A
172 174parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 7first strand
Strand 2
B
33 38parallel
Strand 3
B
75 78parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 142first strand
Strand 2
B
172 175parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il