Analysis of interatomic Contacts of Structural Units in PDB entry:
3M6I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3M6I entry

There are 2 chains in PDB entry 3M6I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5LEU 362
B
 ALA 5LEU 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3M6I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 35Right-handed alpha
Helix 2
2
A
53 63Right-handed alpha
Helix 3
3
A
111 116Right-handed alpha
Helix 4
4
A
118 122Right-handed 310
Helix 5
5
A
155 176Right-handed alpha
Helix 6
6
A
189 202Right-handed alpha
Helix 7
7
A
213 224Right-handed alpha
Helix 8
8
A
236 248Right-handed alpha
Helix 9
9
A
262 273Right-handed alpha
Helix 10
10
A
292 300Right-handed alpha
Helix 11
11
A
312 322Right-handed alpha
Helix 12
12
A
327 329Right-handed 310
Helix 13
13
A
339 349Right-handed alpha
Helix 14
14
A
350 353Right-handed 310
Helix 15
15
B
28 35Right-handed alpha
Helix 16
16
B
53 62Right-handed alpha
Helix 17
17
B
111 116Right-handed alpha
Helix 18
18
B
118 122Right-handed 310
Helix 19
19
B
155 176Right-handed alpha
Helix 20
20
B
189 202Right-handed alpha
Helix 21
21
B
213 224Right-handed alpha
Helix 22
22
B
236 248Right-handed alpha
Helix 23
23
B
262 273Right-handed alpha
Helix 24
24
B
292 299Right-handed alpha
Helix 25
25
B
312 322Right-handed alpha
Helix 26
26
B
327 329Right-handed 310
Helix 27
27
B
339 349Right-handed alpha
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There are 10 sheets in PDB entry 3M6I. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
10 14anti-parallel
Strand 3
A
74 75anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 144first strand
Strand 2
A
42 51anti-parallel
Strand 3
A
79 87anti-parallel
Strand 4
A
99 102anti-parallel
Strand 5
A
148 150anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 144first strand
Strand 2
A
42 51anti-parallel
Strand 3
A
356 360anti-parallel
Strand 4
A
331 336parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
126 127anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 231first strand
Strand 2
A
207 211parallel
Strand 3
A
183 186parallel
Strand 4
A
255 258parallel
Strand 5
A
278 281parallel
Strand 6
A
302 305parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 23first strand
Strand 2
B
11 14anti-parallel
Strand 3
B
74 75anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 144first strand
Strand 2
B
42 51anti-parallel
Strand 3
B
79 87anti-parallel
Strand 4
B
99 102anti-parallel
Strand 5
B
148 150anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 144first strand
Strand 2
B
42 51anti-parallel
Strand 3
B
356 360anti-parallel
Strand 4
B
331 336parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
126 127anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 231first strand
Strand 2
B
207 211parallel
Strand 3
B
183 186parallel
Strand 4
B
255 258parallel
Strand 5
B
278 281parallel
Strand 6
B
302 305parallel
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