Analysis of interatomic Contacts of Structural Units in PDB entry:
3M6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3M6M entry

There are 6 chains in PDB entry 3M6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 14GLN 280
B
 SER 14GLN 280
C
 SER 14GLN 280
D
 MET 462ALA 581
E
 ARG 463ALA 581
F
 MET 462ALA 581
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 3M6M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 66Right-handed alpha
Helix 2
2
A
87 98Right-handed alpha
Helix 3
3
A
99 119Right-handed alpha
Helix 4
4
A
120 123Right-handed 310
Helix 5
5
A
137 145Right-handed alpha
Helix 6
6
A
160 165Right-handed 310
Helix 7
7
A
171 177Right-handed alpha
Helix 8
8
A
181 192Right-handed alpha
Helix 9
9
A
197 203Right-handed alpha
Helix 10
10
A
214 228Right-handed alpha
Helix 11
11
A
229 242Right-handed alpha
Helix 12
12
A
247 263Right-handed alpha
Helix 13
13
A
266 280Right-handed alpha
Helix 14
14
B
45 66Right-handed alpha
Helix 15
15
B
87 98Right-handed alpha
Helix 16
16
B
99 119Right-handed alpha
Helix 17
17
B
120 123Right-handed 310
Helix 18
18
B
137 145Right-handed alpha
Helix 19
19
B
160 165Right-handed 310
Helix 20
20
B
171 177Right-handed alpha
Helix 21
21
B
181 192Right-handed alpha
Helix 22
22
B
197 203Right-handed alpha
Helix 23
23
B
214 228Right-handed alpha
Helix 24
24
B
229 242Right-handed alpha
Helix 25
25
B
247 264Right-handed alpha
Helix 26
26
B
266 280Right-handed alpha
Helix 27
27
C
45 66Right-handed alpha
Helix 28
28
C
87 98Right-handed alpha
Helix 29
29
C
99 119Right-handed alpha
Helix 30
30
C
120 123Right-handed 310
Helix 31
31
C
137 145Right-handed alpha
Helix 32
32
C
160 165Right-handed 310
Helix 33
33
C
171 177Right-handed alpha
Helix 34
34
C
181 192Right-handed alpha
Helix 35
35
C
197 203Right-handed alpha
Helix 36
36
C
214 228Right-handed alpha
Helix 37
37
C
229 242Right-handed alpha
Helix 38
38
C
247 264Right-handed alpha
Helix 39
39
C
266 280Right-handed alpha
Helix 40
40
D
470 483Right-handed alpha
Helix 41
41
D
493 504Right-handed alpha
Helix 42
42
D
519 533Right-handed alpha
Helix 43
43
D
548 558Right-handed alpha
Helix 44
44
D
569 581Right-handed alpha
Helix 45
45
E
470 480Right-handed alpha
Helix 46
46
E
493 504Right-handed alpha
Helix 47
47
E
519 534Right-handed alpha
Helix 48
48
E
548 557Right-handed alpha
Helix 49
49
E
569 579Right-handed alpha
Helix 50
50
F
470 481Right-handed alpha
Helix 51
51
F
493 504Right-handed alpha
Helix 52
52
F
519 533Right-handed alpha
Helix 53
53
F
548 557Right-handed alpha
Helix 54
54
F
569 580Right-handed alpha
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There are 9 sheets in PDB entry 3M6M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 21first strand
Strand 2
A
26 31anti-parallel
Strand 3
A
72 77parallel
Strand 4
A
126 131parallel
Strand 5
A
148 152parallel
Strand 6
A
208 210parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
156 158parallel
Strand 3
A
194 196anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 21first strand
Strand 2
B
26 31anti-parallel
Strand 3
B
72 77parallel
Strand 4
B
126 131parallel
Strand 5
B
148 152parallel
Strand 6
B
208 210parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 136first strand
Strand 2
B
156 158parallel
Strand 3
B
194 196anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 21first strand
Strand 2
C
26 31anti-parallel
Strand 3
C
72 77parallel
Strand 4
C
126 131parallel
Strand 5
C
148 152parallel
Strand 6
C
208 210parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
135 136first strand
Strand 2
C
156 158parallel
Strand 3
C
194 196anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
487 491first strand
Strand 2
D
463 467parallel
Strand 3
D
508 512parallel
Strand 4
D
540 544parallel
Strand 5
D
562 565parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
488 491first strand
Strand 2
E
464 467parallel
Strand 3
E
508 512parallel
Strand 4
E
540 544parallel
Strand 5
E
562 565parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
488 491first strand
Strand 2
F
464 467parallel
Strand 3
F
508 512parallel
Strand 4
F
540 544parallel
Strand 5
F
562 565parallel
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