Analysis of interatomic Contacts of Structural Units in PDB entry:
3M6S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3M6S entry

There are 12 chains in PDB entry 3M6S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP -2	PRO 322
B	LEU 2	ARG 170
C	GLY 0	PRO 322
D	LEU 2	GLU 172
E	GLY 0	PRO 322
F	LEU 2	GLU 172
G	ASP 1	PRO 322
H	LEU 2	GLU 171
I	GLY 0	VAL 321
J	LEU 2	GLU 171
K	THR 2	PRO 322
L	LEU 2	GLU 172

There are 54 helices in PDB entry 3M6S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	56	63	Right-handed alpha
Helix 2	2	A	64	68	Right-handed 310
Helix 3	3	A	97	105	Right-handed alpha
Helix 4	4	A	118	123	Right-handed alpha
Helix 5	5	A	184	193	Right-handed alpha
Helix 6	6	B	37	58	Right-handed alpha
Helix 7	7	B	74	127	Right-handed alpha
Helix 8	8	B	145	154	Right-handed alpha
Helix 9	9	B	158	170	Right-handed alpha
Helix 10	10	C	56	63	Right-handed alpha
Helix 11	11	C	64	68	Right-handed 310
Helix 12	12	C	97	105	Right-handed alpha
Helix 13	13	C	118	123	Right-handed alpha
Helix 14	14	C	184	193	Right-handed alpha
Helix 15	15	D	37	58	Right-handed alpha
Helix 16	16	D	74	127	Right-handed alpha
Helix 17	17	D	145	154	Right-handed alpha
Helix 18	18	D	158	171	Right-handed alpha
Helix 19	19	E	56	63	Right-handed alpha
Helix 20	20	E	64	68	Right-handed 310
Helix 21	21	E	97	106	Right-handed alpha
Helix 22	22	E	118	123	Right-handed alpha
Helix 23	23	E	184	193	Right-handed alpha
Helix 24	24	F	37	58	Right-handed alpha
Helix 25	25	F	74	127	Right-handed alpha
Helix 26	26	F	145	154	Right-handed alpha
Helix 27	27	F	158	172	Right-handed alpha
Helix 28	28	G	56	63	Right-handed alpha
Helix 29	29	G	64	68	Right-handed 310
Helix 30	30	G	97	105	Right-handed alpha
Helix 31	31	G	118	123	Right-handed alpha
Helix 32	32	G	184	193	Right-handed alpha
Helix 33	33	H	37	58	Right-handed alpha
Helix 34	34	H	74	127	Right-handed alpha
Helix 35	35	H	145	154	Right-handed alpha
Helix 36	36	H	158	170	Right-handed alpha
Helix 37	37	I	56	63	Right-handed alpha
Helix 38	38	I	64	68	Right-handed 310
Helix 39	39	I	97	105	Right-handed alpha
Helix 40	40	I	118	123	Right-handed alpha
Helix 41	41	I	184	193	Right-handed alpha
Helix 42	42	J	37	58	Right-handed alpha
Helix 43	43	J	74	127	Right-handed alpha
Helix 44	44	J	145	154	Right-handed alpha
Helix 45	45	J	158	171	Right-handed alpha
Helix 46	46	K	56	63	Right-handed alpha
Helix 47	47	K	64	68	Right-handed 310
Helix 48	48	K	97	106	Right-handed alpha
Helix 49	49	K	118	123	Right-handed alpha
Helix 50	50	K	184	193	Right-handed alpha
Helix 51	51	L	37	58	Right-handed alpha
Helix 52	52	L	74	127	Right-handed alpha
Helix 53	53	L	145	154	Right-handed alpha
Helix 54	54	L	158	170	Right-handed alpha

There are 66 sheets in PDB entry 3M6S. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	36	first strand
Strand 2	B	22	27	anti-parallel
Strand 3	A	2	7	anti-parallel
Strand 4	B	137	140	anti-parallel
Strand 5	B	130	134	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	24	25	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	313	315	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	292	293	parallel
Strand 3	A	305	306	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	272	277	parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	79	81	parallel
Strand 3	A	265	267	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	114	first strand
Strand 2	A	254	259	anti-parallel
Strand 3	A	172	181	anti-parallel
Strand 4	A	248	251	anti-parallel
Strand 5	A	148	150	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	114	first strand
Strand 2	A	254	259	anti-parallel
Strand 3	A	172	181	anti-parallel
Strand 4	A	226	234	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	137	first strand
Strand 2	A	142	143	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	166	first strand
Strand 2	A	239	244	anti-parallel
Strand 3	A	199	202	anti-parallel
Strand 4	A	207	210	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	279	281	anti-parallel
Strand 3	A	300	302	anti-parallel
Strand 4	B	63	65	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	36	first strand
Strand 2	D	22	27	anti-parallel
Strand 3	C	2	7	anti-parallel
Strand 4	D	137	140	anti-parallel
Strand 5	D	130	134	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	16	first strand
Strand 2	C	24	25	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	313	315	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	292	293	parallel
Strand 3	C	305	306	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	44	first strand
Strand 2	C	272	277	parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	C	79	81	parallel
Strand 3	C	265	267	parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	114	first strand
Strand 2	C	254	259	anti-parallel
Strand 3	C	172	181	anti-parallel
Strand 4	C	248	251	anti-parallel
Strand 5	C	148	150	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	114	first strand
Strand 2	C	254	259	anti-parallel
Strand 3	C	172	181	anti-parallel
Strand 4	C	226	234	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	137	first strand
Strand 2	C	142	143	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	166	first strand
Strand 2	C	239	244	anti-parallel
Strand 3	C	199	202	anti-parallel
Strand 4	C	207	210	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	285	first strand
Strand 2	C	279	281	anti-parallel
Strand 3	C	300	302	anti-parallel
Strand 4	D	63	65	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	36	first strand
Strand 2	F	22	27	anti-parallel
Strand 3	E	2	7	anti-parallel
Strand 4	F	137	140	anti-parallel
Strand 5	F	130	134	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	16	first strand
Strand 2	E	24	25	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	313	315	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	34	first strand
Strand 2	E	292	293	parallel
Strand 3	E	305	306	parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	44	first strand
Strand 2	E	272	277	parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	51	first strand
Strand 2	E	79	81	parallel
Strand 3	E	265	267	parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	115	first strand
Strand 2	E	253	259	anti-parallel
Strand 3	E	172	181	anti-parallel
Strand 4	E	248	251	anti-parallel
Strand 5	E	148	150	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	115	first strand
Strand 2	E	253	259	anti-parallel
Strand 3	E	172	181	anti-parallel
Strand 4	E	226	234	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	137	first strand
Strand 2	E	142	143	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	166	first strand
Strand 2	E	239	244	anti-parallel
Strand 3	E	199	202	anti-parallel
Strand 4	E	207	210	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	284	285	first strand
Strand 2	E	279	281	anti-parallel
Strand 3	E	300	302	anti-parallel
Strand 4	F	63	65	anti-parallel

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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	32	36	first strand
Strand 2	H	22	27	anti-parallel
Strand 3	G	2	7	anti-parallel
Strand 4	H	137	140	anti-parallel
Strand 5	H	130	134	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	16	first strand
Strand 2	G	24	25	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	31	first strand
Strand 2	G	313	315	anti-parallel

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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	34	first strand
Strand 2	G	292	293	parallel
Strand 3	G	305	306	parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	41	44	first strand
Strand 2	G	272	277	parallel

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There are 3 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	50	51	first strand
Strand 2	G	79	81	parallel
Strand 3	G	265	267	parallel

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There are 5 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	108	114	first strand
Strand 2	G	254	259	anti-parallel
Strand 3	G	172	181	anti-parallel
Strand 4	G	248	251	anti-parallel
Strand 5	G	148	150	anti-parallel

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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	108	114	first strand
Strand 2	G	254	259	anti-parallel
Strand 3	G	172	181	anti-parallel
Strand 4	G	226	234	anti-parallel

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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	133	137	first strand
Strand 2	G	142	143	anti-parallel

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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	161	166	first strand
Strand 2	G	239	244	anti-parallel
Strand 3	G	199	202	anti-parallel
Strand 4	G	207	210	anti-parallel

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There are 4 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	284	285	first strand
Strand 2	G	279	281	anti-parallel
Strand 3	G	300	302	anti-parallel
Strand 4	H	63	65	anti-parallel

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There are 5 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	32	36	first strand
Strand 2	J	22	27	anti-parallel
Strand 3	I	2	7	anti-parallel
Strand 4	J	137	140	anti-parallel
Strand 5	J	130	134	anti-parallel

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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	15	16	first strand
Strand 2	I	24	25	anti-parallel

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There are 2 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	29	31	first strand
Strand 2	I	313	315	anti-parallel

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There are 3 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	33	34	first strand
Strand 2	I	292	293	parallel
Strand 3	I	305	306	parallel

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There are 2 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	41	44	first strand
Strand 2	I	272	277	parallel

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There are 3 strands in AX sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	50	51	first strand
Strand 2	I	79	81	parallel
Strand 3	I	265	267	parallel

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There are 5 strands in AY sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	108	115	first strand
Strand 2	I	253	259	anti-parallel
Strand 3	I	172	181	anti-parallel
Strand 4	I	248	251	anti-parallel
Strand 5	I	148	150	anti-parallel

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There are 4 strands in AZ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	108	115	first strand
Strand 2	I	253	259	anti-parallel
Strand 3	I	172	181	anti-parallel
Strand 4	I	226	234	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	133	137	first strand
Strand 2	I	142	143	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	161	166	first strand
Strand 2	I	239	244	anti-parallel
Strand 3	I	199	202	anti-parallel
Strand 4	I	207	210	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	284	285	first strand
Strand 2	I	279	281	anti-parallel
Strand 3	I	300	301	anti-parallel
Strand 4	J	64	65	anti-parallel

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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	32	36	first strand
Strand 2	L	22	27	anti-parallel
Strand 3	K	3	7	anti-parallel
Strand 4	L	137	140	anti-parallel
Strand 5	L	130	134	anti-parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	15	16	first strand
Strand 2	K	24	25	anti-parallel

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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	29	31	first strand
Strand 2	K	313	315	anti-parallel

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There are 3 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	33	34	first strand
Strand 2	K	292	293	parallel
Strand 3	K	305	306	parallel

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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	41	44	first strand
Strand 2	K	272	277	parallel

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There are 3 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	50	51	first strand
Strand 2	K	79	81	parallel
Strand 3	K	265	267	parallel

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There are 5 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	108	114	first strand
Strand 2	K	254	259	anti-parallel
Strand 3	K	172	181	anti-parallel
Strand 4	K	248	251	anti-parallel
Strand 5	K	148	150	anti-parallel

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There are 4 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	108	114	first strand
Strand 2	K	254	259	anti-parallel
Strand 3	K	172	181	anti-parallel
Strand 4	K	226	234	anti-parallel

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There are 2 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	133	137	first strand
Strand 2	K	142	143	anti-parallel

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There are 4 strands in BM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	161	166	first strand
Strand 2	K	239	244	anti-parallel
Strand 3	K	199	202	anti-parallel
Strand 4	K	207	210	anti-parallel

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There are 4 strands in BN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	284	285	first strand
Strand 2	K	279	281	anti-parallel
Strand 3	K	300	301	anti-parallel
Strand 4	L	64	65	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3M6S

Analysis of interatomic Contacts of Structural Units in PDB entry:
3M6S