Analysis of interatomic Contacts of Structural Units in PDB entry:
3M6V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3M6V entry

There are 2 chains in PDB entry 3M6V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2HIS 459
B
 LEU 2HIS 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3M6V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 15Right-handed alpha
Helix 2
2
A
17 28Right-handed alpha
Helix 3
3
A
42 50Right-handed alpha
Helix 4
4
A
75 80Right-handed alpha
Helix 5
5
A
88 90Right-handed 310
Helix 6
6
A
91 98Right-handed alpha
Helix 7
7
A
113 123Right-handed alpha
Helix 8
8
A
135 150Right-handed alpha
Helix 9
9
A
159 168Right-handed alpha
Helix 10
10
A
182 186Right-handed 310
Helix 11
11
A
191 196Right-handed 310
Helix 12
12
A
199 217Right-handed alpha
Helix 13
13
A
233 236Right-handed 310
Helix 14
14
A
237 248Right-handed alpha
Helix 15
15
A
266 270Right-handed 310
Helix 16
16
A
273 278Right-handed 310
Helix 17
17
A
316 331Right-handed alpha
Helix 18
18
A
378 385Right-handed alpha
Helix 19
19
A
404 412Right-handed alpha
Helix 20
20
B
3 15Right-handed alpha
Helix 21
21
B
17 28Right-handed alpha
Helix 22
22
B
42 50Right-handed alpha
Helix 23
23
B
75 80Right-handed alpha
Helix 24
24
B
88 90Right-handed 310
Helix 25
25
B
91 98Right-handed alpha
Helix 26
26
B
113 123Right-handed alpha
Helix 27
27
B
135 150Right-handed alpha
Helix 28
28
B
159 168Right-handed alpha
Helix 29
29
B
182 186Right-handed 310
Helix 30
30
B
192 196Right-handed 310
Helix 31
31
B
199 217Right-handed alpha
Helix 32
32
B
233 236Right-handed 310
Helix 33
33
B
237 248Right-handed alpha
Helix 34
34
B
266 271Right-handed 310
Helix 35
35
B
273 278Right-handed 310
Helix 36
36
B
316 331Right-handed alpha
Helix 37
37
B
378 385Right-handed alpha
Helix 38
38
B
404 412Right-handed alpha
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There are 10 sheets in PDB entry 3M6V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
60 65anti-parallel
Strand 3
A
33 36anti-parallel
Strand 4
A
83 85anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
128 132parallel
Strand 3
A
104 107parallel
Strand 4
A
171 177parallel
Strand 5
A
219 229parallel
Strand 6
A
292 299anti-parallel
Strand 7
A
251 253anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
128 132parallel
Strand 3
A
104 107parallel
Strand 4
A
171 177parallel
Strand 5
A
219 229parallel
Strand 6
A
292 299anti-parallel
Strand 7
A
280 282anti-parallel
Strand 8
A
263 264anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 341first strand
Strand 2
A
344 347anti-parallel
Strand 3
A
365 371anti-parallel
Strand 4
A
374 377anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 400first strand
Strand 2
A
423 432parallel
Strand 3
A
435 445anti-parallel
Strand 4
A
448 451anti-parallel
Strand 5
A
416 417anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 57first strand
Strand 2
B
60 65anti-parallel
Strand 3
B
33 36anti-parallel
Strand 4
B
83 85anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 254first strand
Strand 2
B
292 299anti-parallel
Strand 3
B
280 282anti-parallel
Strand 4
B
263 264anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 254first strand
Strand 2
B
292 299anti-parallel
Strand 3
B
219 229anti-parallel
Strand 4
B
171 177parallel
Strand 5
B
104 107parallel
Strand 6
B
128 132parallel
Strand 7
B
154 157parallel
Strand 8
B
359 362anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 341first strand
Strand 2
B
344 347anti-parallel
Strand 3
B
365 371anti-parallel
Strand 4
B
374 377anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
397 400first strand
Strand 2
B
423 432parallel
Strand 3
B
435 445anti-parallel
Strand 4
B
448 451anti-parallel
Strand 5
B
416 417anti-parallel
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