Analysis of interatomic Contacts of Structural Units in PDB entry:
3M6Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3M6Y entry

There are 4 chains in PDB entry 3M6Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0ALA 251
B
 THR 2ALA 251
C
 ASN 3TYR 250
D
 THR 2ALA 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 56 helices in PDB entry 3M6Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 12Right-handed 310
Helix 2
2
A
21 32Right-handed alpha
Helix 3
3
A
43 45Right-handed 310
Helix 4
4
A
47 62Right-handed alpha
Helix 5
5
A
74 76Right-handed 310
Helix 6
6
A
77 85Right-handed alpha
Helix 7
7
A
96 98Right-handed 310
Helix 8
8
A
99 108Right-handed alpha
Helix 9
9
A
134 138Right-handed 310
Helix 10
10
A
146 157Right-handed alpha
Helix 11
11
A
171 186Right-handed alpha
Helix 12
12
A
199 210Right-handed alpha
Helix 13
13
A
220 224Right-handed 310
Helix 14
14
A
232 248Right-handed alpha
Helix 15
15
B
3 12Right-handed 310
Helix 16
16
B
21 32Right-handed alpha
Helix 17
17
B
43 45Right-handed 310
Helix 18
18
B
47 62Right-handed alpha
Helix 19
19
B
74 76Right-handed 310
Helix 20
20
B
77 85Right-handed alpha
Helix 21
21
B
96 98Right-handed 310
Helix 22
22
B
99 108Right-handed alpha
Helix 23
23
B
132 137Right-handed alpha
Helix 24
24
B
146 157Right-handed alpha
Helix 25
25
B
171 186Right-handed alpha
Helix 26
26
B
199 210Right-handed alpha
Helix 27
27
B
220 224Right-handed 310
Helix 28
28
B
232 251Right-handed alpha
Helix 29
29
C
3 12Right-handed 310
Helix 30
30
C
21 32Right-handed alpha
Helix 31
31
C
43 45Right-handed 310
Helix 32
32
C
47 62Right-handed alpha
Helix 33
33
C
74 76Right-handed 310
Helix 34
34
C
77 85Right-handed alpha
Helix 35
35
C
96 98Right-handed 310
Helix 36
36
C
99 108Right-handed alpha
Helix 37
37
C
132 137Right-handed alpha
Helix 38
38
C
146 157Right-handed alpha
Helix 39
39
C
171 186Right-handed alpha
Helix 40
40
C
199 210Right-handed alpha
Helix 41
41
C
220 224Right-handed 310
Helix 42
42
C
232 250Right-handed alpha
Helix 43
43
D
3 12Right-handed 310
Helix 44
44
D
21 32Right-handed alpha
Helix 45
45
D
43 45Right-handed 310
Helix 46
46
D
47 62Right-handed alpha
Helix 47
47
D
74 76Right-handed 310
Helix 48
48
D
77 85Right-handed alpha
Helix 49
49
D
96 98Right-handed 310
Helix 50
50
D
99 108Right-handed alpha
Helix 51
51
D
134 138Right-handed 310
Helix 52
52
D
146 157Right-handed alpha
Helix 53
53
D
171 186Right-handed alpha
Helix 54
54
D
199 211Right-handed alpha
Helix 55
55
D
220 224Right-handed 310
Helix 56
56
D
232 248Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3M6Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 191first strand
Strand 2
A
160 163parallel
Strand 3
A
113 118parallel
Strand 4
A
92 93parallel
Strand 5
A
66 69parallel
Strand 6
A
36 41parallel
Strand 7
A
15 18parallel
Strand 8
A
218 219parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
143 145anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 191first strand
Strand 2
B
160 163parallel
Strand 3
B
113 118parallel
Strand 4
B
92 93parallel
Strand 5
B
66 69parallel
Strand 6
B
36 41parallel
Strand 7
B
15 18parallel
Strand 8
B
218 219parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 128first strand
Strand 2
B
143 145anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
188 191first strand
Strand 2
C
160 163parallel
Strand 3
C
113 118parallel
Strand 4
C
92 93parallel
Strand 5
C
66 69parallel
Strand 6
C
36 41parallel
Strand 7
C
15 18parallel
Strand 8
C
218 219parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 128first strand
Strand 2
C
143 145anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
188 191first strand
Strand 2
D
160 163parallel
Strand 3
D
113 118parallel
Strand 4
D
92 93parallel
Strand 5
D
66 69parallel
Strand 6
D
36 41parallel
Strand 7
D
15 18parallel
Strand 8
D
218 219parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
126 128first strand
Strand 2
D
143 145anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il