Analysis of interatomic Contacts of Structural Units in PDB entry:
3M70


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3M70 entry

There is 1 chain in PDB entry 3M70 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LYS 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3M70. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 25Right-handed 310
Helix 2
2
A
97 104Right-handed alpha
Helix 3
3
A
109 119Right-handed alpha
Helix 4
4
A
132 141Right-handed alpha
Helix 5
5
A
151 165Right-handed alpha
Helix 6
6
A
175 179Right-handed 310
Helix 7
7
A
193 197Right-handed 310
Helix 8
8
A
198 200Right-handed 310
Helix 9
9
A
201 212Right-handed alpha
Helix 10
10
A
243 249Right-handed alpha
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There are 5 sheets in PDB entry 3M70. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
86 94anti-parallel
Strand 3
A
14 15anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
86 94anti-parallel
Strand 3
A
34 41anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 61first strand
Strand 2
A
44 49anti-parallel
Strand 3
A
76 80anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 173first strand
Strand 2
A
144 149parallel
Strand 3
A
123 127parallel
Strand 4
A
185 190parallel
Strand 5
A
213 224parallel
Strand 6
A
273 284anti-parallel
Strand 7
A
253 258anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 173first strand
Strand 2
A
144 149parallel
Strand 3
A
123 127parallel
Strand 4
A
185 190parallel
Strand 5
A
213 224parallel
Strand 6
A
273 284anti-parallel
Strand 7
A
261 267anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il