Analysis of interatomic Contacts of Structural Units in PDB entry:
3M7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3M7F entry

There are 2 chains in PDB entry 3M7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 429ALA 535
B
 GLU 112PRO 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 3 helices in PDB entry 3M7F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
429 433Right-handed 310
Helix 2
2
A
441 452Right-handed alpha
Helix 3
3
A
508 517Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3M7F. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 498first strand
Strand 2
A
480 491anti-parallel
Strand 3
A
471 477anti-parallel
Strand 4
A
458 463anti-parallel
Strand 5
A
529 530parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
504 506first strand
Strand 2
B
154 160anti-parallel
Strand 3
B
142 150anti-parallel
Strand 4
B
186 193anti-parallel
Strand 5
B
201 209anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 180first strand
Strand 2
B
119 129anti-parallel
Strand 3
B
243 250anti-parallel
Strand 4
B
227 230anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il