Analysis of interatomic Contacts of Structural Units in PDB entry:
3M83


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3M83 entry

There are 12 chains in PDB entry 3M83 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0GLY 187
A
 GLN 189LYS 324
B
 HIS 0GLY 187
B
 GLN 189LYS 324
C
 HIS 0GLY 187
C
 GLN 189LYS 324
D
 HIS 0GLY 187
D
 GLN 189GLU 323
E
 HIS 0GLY 187
E
 GLN 189GLU 323
F
 HIS 0GLY 187
F
 GLN 189LYS 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 3M83. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 12Right-handed alpha
Helix 2
2
A
23 37Right-handed alpha
Helix 3
3
A
64 66Right-handed 310
Helix 4
4
A
98 102Right-handed 310
Helix 5
5
A
103 108Right-handed alpha
Helix 6
6
A
155 173Right-handed alpha
Helix 7
7
A
188 201Right-handed alpha
Helix 8
8
A
216 224Right-handed alpha
Helix 9
9
A
228 239Right-handed alpha
Helix 10
10
A
242 252Right-handed alpha
Helix 11
11
A
254 260Right-handed alpha
Helix 12
12
A
278 289Right-handed alpha
Helix 13
13
A
306 323Right-handed alpha
Helix 14
14
B
7 12Right-handed alpha
Helix 15
15
B
23 37Right-handed alpha
Helix 16
16
B
64 66Right-handed 310
Helix 17
17
B
98 102Right-handed 310
Helix 18
18
B
103 108Right-handed alpha
Helix 19
19
B
155 174Right-handed alpha
Helix 20
20
B
188 201Right-handed alpha
Helix 21
21
B
216 224Right-handed alpha
Helix 22
22
B
228 239Right-handed alpha
Helix 23
23
B
242 252Right-handed alpha
Helix 24
24
B
254 260Right-handed alpha
Helix 25
25
B
278 289Right-handed alpha
Helix 26
26
B
306 323Right-handed alpha
Helix 27
27
C
7 12Right-handed alpha
Helix 28
28
C
23 37Right-handed alpha
Helix 29
29
C
64 66Right-handed 310
Helix 30
30
C
98 102Right-handed 310
Helix 31
31
C
103 108Right-handed alpha
Helix 32
32
C
155 173Right-handed alpha
Helix 33
33
C
188 201Right-handed alpha
Helix 34
34
C
216 224Right-handed alpha
Helix 35
35
C
228 239Right-handed alpha
Helix 36
36
C
242 252Right-handed alpha
Helix 37
37
C
254 260Right-handed alpha
Helix 38
38
C
278 289Right-handed alpha
Helix 39
39
C
306 323Right-handed alpha
Helix 40
40
D
7 12Right-handed alpha
Helix 41
41
D
23 37Right-handed alpha
Helix 42
42
D
64 66Right-handed 310
Helix 43
43
D
98 102Right-handed 310
Helix 44
44
D
103 108Right-handed alpha
Helix 45
45
D
155 173Right-handed alpha
Helix 46
46
D
188 201Right-handed alpha
Helix 47
47
D
216 224Right-handed alpha
Helix 48
48
D
229 239Right-handed alpha
Helix 49
49
D
242 252Right-handed alpha
Helix 50
50
D
254 260Right-handed alpha
Helix 51
51
D
278 289Right-handed alpha
Helix 52
52
D
306 323Right-handed alpha
Helix 53
53
E
7 12Right-handed alpha
Helix 54
54
E
23 37Right-handed alpha
Helix 55
55
E
64 66Right-handed 310
Helix 56
56
E
98 102Right-handed 310
Helix 57
57
E
103 108Right-handed alpha
Helix 58
58
E
155 173Right-handed alpha
Helix 59
59
E
188 201Right-handed alpha
Helix 60
60
E
216 224Right-handed alpha
Helix 61
61
E
228 239Right-handed alpha
Helix 62
62
E
242 252Right-handed alpha
Helix 63
63
E
254 260Right-handed alpha
Helix 64
64
E
278 289Right-handed alpha
Helix 65
65
E
306 323Right-handed alpha
Helix 66
66
F
7 12Right-handed alpha
Helix 67
67
F
23 37Right-handed alpha
Helix 68
68
F
64 66Right-handed 310
Helix 69
69
F
98 102Right-handed 310
Helix 70
70
F
103 108Right-handed alpha
Helix 71
71
F
155 173Right-handed alpha
Helix 72
72
F
188 201Right-handed alpha
Helix 73
73
F
216 224Right-handed alpha
Helix 74
74
F
228 239Right-handed alpha
Helix 75
75
F
242 252Right-handed alpha
Helix 76
76
F
254 260Right-handed alpha
Helix 77
77
F
278 289Right-handed alpha
Helix 78
78
F
306 324Right-handed alpha
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There are 6 sheets in PDB entry 3M83. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
54 62anti-parallel
Strand 3
A
68 76anti-parallel
Strand 4
A
111 115anti-parallel
Strand 5
A
83 88parallel
Strand 6
A
177 187parallel
Strand 7
A
206 210parallel
Strand 8
A
266 271parallel
Strand 9
A
293 298parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
54 62anti-parallel
Strand 3
B
68 76anti-parallel
Strand 4
B
111 115anti-parallel
Strand 5
B
83 88parallel
Strand 6
B
177 187parallel
Strand 7
B
206 210parallel
Strand 8
B
266 271parallel
Strand 9
B
293 298parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 46first strand
Strand 2
C
54 62anti-parallel
Strand 3
C
68 76anti-parallel
Strand 4
C
111 115anti-parallel
Strand 5
C
83 88parallel
Strand 6
C
177 187parallel
Strand 7
C
206 210parallel
Strand 8
C
266 271parallel
Strand 9
C
293 298parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
43 46first strand
Strand 2
D
54 62anti-parallel
Strand 3
D
68 76anti-parallel
Strand 4
D
111 115anti-parallel
Strand 5
D
83 88parallel
Strand 6
D
177 187parallel
Strand 7
D
206 210parallel
Strand 8
D
266 271parallel
Strand 9
D
293 298parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
43 46first strand
Strand 2
E
54 62anti-parallel
Strand 3
E
68 76anti-parallel
Strand 4
E
111 115anti-parallel
Strand 5
E
83 88parallel
Strand 6
E
177 187parallel
Strand 7
E
206 210parallel
Strand 8
E
266 271parallel
Strand 9
E
293 298parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
43 46first strand
Strand 2
F
54 62anti-parallel
Strand 3
F
68 76anti-parallel
Strand 4
F
111 115anti-parallel
Strand 5
F
83 88parallel
Strand 6
F
177 187parallel
Strand 7
F
206 210parallel
Strand 8
F
266 271parallel
Strand 9
F
293 298parallel
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