Analysis of interatomic Contacts of Structural Units in PDB entry:
3M8L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3M8L entry

There are 3 chains in PDB entry 3M8L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 129	ARG 662
B	PRO 133	ARG 662
C	SER 129	ARG 662

There are 18 helices in PDB entry 3M8L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	198	206	Right-handed alpha
Helix 2	2	A	245	250	Right-handed 310
Helix 3	3	A	587	595	Right-handed alpha
Helix 4	4	B	146	155	Right-handed alpha
Helix 5	5	B	156	159	Right-handed 310
Helix 6	6	B	198	206	Right-handed alpha
Helix 7	7	B	245	250	Right-handed 310
Helix 8	8	B	345	349	Right-handed 310
Helix 9	9	B	504	508	Right-handed 310
Helix 10	10	B	543	547	Right-handed 310
Helix 11	11	B	587	597	Right-handed alpha
Helix 12	12	C	150	158	Right-handed alpha
Helix 13	13	C	164	168	Right-handed 310
Helix 14	14	C	198	205	Right-handed alpha
Helix 15	15	C	206	208	Right-handed 310
Helix 16	16	C	246	250	Right-handed 310
Helix 17	17	C	543	547	Right-handed 310
Helix 18	18	C	587	597	Right-handed alpha

There are 26 sheets in PDB entry 3M8L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	179	first strand
Strand 2	A	307	316	anti-parallel
Strand 3	A	215	222	anti-parallel
Strand 4	A	264	268	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	189	first strand
Strand 2	A	287	290	anti-parallel
Strand 3	A	232	235	anti-parallel
Strand 4	A	253	255	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	212	first strand
Strand 2	A	321	322	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	241	first strand
Strand 2	B	331	332	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	332	first strand
Strand 2	C	240	241	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	363	first strand
Strand 2	A	563	570	anti-parallel
Strand 3	A	581	584	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	363	first strand
Strand 2	A	563	570	anti-parallel
Strand 3	A	630	631	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	487	first strand
Strand 2	A	467	469	anti-parallel
Strand 3	A	529	531	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	644	645	first strand
Strand 2	A	608	612	anti-parallel
Strand 3	A	618	622	anti-parallel
Strand 4	A	659	660	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	191	first strand
Strand 2	B	286	291	anti-parallel
Strand 3	B	230	236	anti-parallel
Strand 4	B	256	257	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	278	first strand
Strand 2	B	210	212	anti-parallel
Strand 3	B	321	322	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	268	first strand
Strand 2	B	215	222	anti-parallel
Strand 3	B	309	316	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	241	first strand
Strand 2	C	331	332	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	363	first strand
Strand 2	B	563	566	anti-parallel
Strand 3	B	630	631	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	367	first strand
Strand 2	B	556	557	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	570	571	first strand
Strand 2	B	579	581	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	605	606	first strand
Strand 2	B	651	652	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	618	621	first strand
Strand 2	B	609	612	anti-parallel
Strand 3	B	644	645	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	179	first strand
Strand 2	C	307	316	anti-parallel
Strand 3	C	215	219	anti-parallel
Strand 4	C	264	268	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	211	first strand
Strand 2	C	277	278	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	257	first strand
Strand 2	C	228	236	anti-parallel
Strand 3	C	286	296	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	366	368	first strand
Strand 2	C	555	557	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	392	first strand
Strand 2	C	526	527	anti-parallel
Strand 3	C	471	472	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	467	468	first strand
Strand 2	C	486	487	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	490	491	first strand
Strand 2	C	498	499	anti-parallel

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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	563	564	first strand
Strand 2	C	629	631	anti-parallel
Strand 3	C	618	623	anti-parallel
Strand 4	C	609	612	anti-parallel
Strand 5	C	644	645	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3M8L

Analysis of interatomic Contacts of Structural Units in PDB entry:
3M8L