Analysis of interatomic Contacts of Structural Units in PDB entry:
3M8N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3M8N entry

There are 4 chains in PDB entry 3M8N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0PRO 203
B
 SER 0PRO 203
C
 SER 0PRO 203
D
 SER 0HIS 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 3M8N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
33 37Right-handed 310
Helix 3
3
A
41 46Right-handed alpha
Helix 4
4
A
66 76Right-handed alpha
Helix 5
5
A
84 102Right-handed alpha
Helix 6
6
A
105 115Right-handed alpha
Helix 7
7
A
120 124Right-handed 310
Helix 8
8
A
126 145Right-handed alpha
Helix 9
9
A
157 168Right-handed alpha
Helix 10
10
A
169 173Right-handed 310
Helix 11
11
A
180 192Right-handed alpha
Helix 12
12
B
10 24Right-handed alpha
Helix 13
13
B
41 46Right-handed alpha
Helix 14
14
B
66 76Right-handed alpha
Helix 15
15
B
84 102Right-handed alpha
Helix 16
16
B
126 146Right-handed alpha
Helix 17
17
B
157 173Right-handed alpha
Helix 18
18
B
180 192Right-handed alpha
Helix 19
19
C
10 24Right-handed alpha
Helix 20
20
C
41 46Right-handed alpha
Helix 21
21
C
66 76Right-handed alpha
Helix 22
22
C
84 102Right-handed alpha
Helix 23
23
C
102 114Right-handed alpha
Helix 24
24
C
127 146Right-handed alpha
Helix 25
25
C
157 168Right-handed alpha
Helix 26
26
C
168 173Right-handed alpha
Helix 27
27
C
176 179Right-handed 310
Helix 28
28
C
180 192Right-handed alpha
Helix 29
29
D
10 23Right-handed alpha
Helix 30
30
D
33 37Right-handed 310
Helix 31
31
D
41 48Right-handed alpha
Helix 32
32
D
66 76Right-handed alpha
Helix 33
33
D
84 102Right-handed alpha
Helix 34
34
D
105 115Right-handed alpha
Helix 35
35
D
123 146Right-handed alpha
Helix 36
36
D
157 168Right-handed alpha
Helix 37
37
D
169 174Right-handed 310
Helix 38
38
D
180 192Right-handed alpha
Helix 39
39
D
209 214Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 3M8N. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
2 6parallel
Strand 3
A
55 57anti-parallel
Strand 4
A
63 65anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
3 6parallel
Strand 3
B
55 59anti-parallel
Strand 4
B
62 65anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 31first strand
Strand 2
C
3 6parallel
Strand 3
C
55 57anti-parallel
Strand 4
C
63 65anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 31first strand
Strand 2
D
2 6parallel
Strand 3
D
55 59anti-parallel
Strand 4
D
62 65anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il