Analysis of interatomic Contacts of Structural Units in PDB entry:
3M8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3M8U entry

There is 1 chain in PDB entry 3M8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 24ASP 531
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3M8U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 43Right-handed 310
Helix 2
2
A
45 52Right-handed alpha
Helix 3
3
A
52 57Right-handed alpha
Helix 4
4
A
110 123Right-handed alpha
Helix 5
5
A
130 134Right-handed 310
Helix 6
6
A
136 142Right-handed alpha
Helix 7
7
A
143 147Right-handed alpha
Helix 8
8
A
169 174Right-handed alpha
Helix 9
9
A
175 180Right-handed 310
Helix 10
10
A
183 193Right-handed alpha
Helix 11
11
A
197 202Right-handed alpha
Helix 12
12
A
245 255Right-handed alpha
Helix 13
13
A
265 273Right-handed alpha
Helix 14
14
A
302 312Right-handed alpha
Helix 15
15
A
314 322Right-handed alpha
Helix 16
16
A
351 362Right-handed alpha
Helix 17
17
A
384 398Right-handed alpha
Helix 18
18
A
409 419Right-handed alpha
Helix 19
19
A
436 445Right-handed alpha
Helix 20
20
A
446 449Right-handed 310
Helix 21
21
A
459 471Right-handed alpha
Helix 22
22
A
474 493Right-handed alpha
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There are 6 sheets in PDB entry 3M8U. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 215first strand
Strand 2
A
219 224anti-parallel
Strand 3
A
237 242anti-parallel
Strand 4
A
26 31parallel
Strand 5
A
260 261parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
70 72anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 80first strand
Strand 2
A
86 91anti-parallel
Strand 3
A
158 163anti-parallel
Strand 4
A
148 155anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 284first strand
Strand 2
A
495 507anti-parallel
Strand 3
A
327 329anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 284first strand
Strand 2
A
495 507anti-parallel
Strand 3
A
287 293anti-parallel
Strand 4
A
424 430anti-parallel
Strand 5
A
368 373parallel
Strand 6
A
401 406parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 512first strand
Strand 2
A
528 529anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il