Analysis of interatomic Contacts of Structural Units in PDB entry:
3M8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3M8Y entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 3M8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2ASP 84
A
 MET 86LEU 392
B
 LYS 3ASP 84
B
 MET 86LEU 392
C
 LYS 3ASP 84
C
 MET 86LEU 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 3M8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 27Right-handed 310
Helix 2
2
A
32 41Right-handed alpha
Helix 3
3
A
46 53Right-handed alpha
Helix 4
4
A
53 58Right-handed alpha
Helix 5
5
A
84 93Right-handed alpha
Helix 6
6
A
109 121Right-handed alpha
Helix 7
7
A
131 147Right-handed alpha
Helix 8
8
A
169 184Right-handed alpha
Helix 9
9
A
186 190Right-handed 310
Helix 10
10
A
223 231Right-handed alpha
Helix 11
11
A
240 245Right-handed alpha
Helix 12
12
A
258 271Right-handed alpha
Helix 13
13
A
283 288Right-handed alpha
Helix 14
14
A
294 316Right-handed alpha
Helix 15
15
A
366 377Right-handed alpha
Helix 16
16
A
388 392Right-handed 310
Helix 17
17
B
22 27Right-handed 310
Helix 18
18
B
32 42Right-handed alpha
Helix 19
19
B
46 53Right-handed alpha
Helix 20
20
B
53 58Right-handed alpha
Helix 21
21
B
84 93Right-handed alpha
Helix 22
22
B
109 121Right-handed alpha
Helix 23
23
B
131 147Right-handed alpha
Helix 24
24
B
169 184Right-handed alpha
Helix 25
25
B
186 190Right-handed 310
Helix 26
26
B
223 231Right-handed alpha
Helix 27
27
B
240 245Right-handed alpha
Helix 28
28
B
258 272Right-handed alpha
Helix 29
29
B
283 288Right-handed alpha
Helix 30
30
B
294 316Right-handed alpha
Helix 31
31
B
366 378Right-handed alpha
Helix 32
32
B
388 392Right-handed 310
Helix 33
33
C
32 42Right-handed alpha
Helix 34
34
C
46 53Right-handed alpha
Helix 35
35
C
53 58Right-handed alpha
Helix 36
36
C
84 93Right-handed alpha
Helix 37
37
C
109 121Right-handed alpha
Helix 38
38
C
131 147Right-handed alpha
Helix 39
39
C
169 184Right-handed alpha
Helix 40
40
C
185 190Right-handed 310
Helix 41
41
C
223 231Right-handed alpha
Helix 42
42
C
240 245Right-handed alpha
Helix 43
43
C
258 271Right-handed alpha
Helix 44
44
C
283 288Right-handed alpha
Helix 45
45
C
294 307Right-handed alpha
Helix 46
46
C
308 316Right-handed alpha
Helix 47
47
C
366 378Right-handed alpha
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There are 9 sheets in PDB entry 3M8Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 76first strand
Strand 2
A
344 349anti-parallel
Strand 3
A
320 325anti-parallel
Strand 4
A
6 12parallel
Strand 5
A
276 282parallel
Strand 6
A
234 238parallel
Strand 7
A
252 254parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 129first strand
Strand 2
A
149 153parallel
Strand 3
A
158 164anti-parallel
Strand 4
A
193 202parallel
Strand 5
A
205 208anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 129first strand
Strand 2
A
149 153parallel
Strand 3
A
158 164anti-parallel
Strand 4
A
193 202parallel
Strand 5
A
213 216anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 76first strand
Strand 2
B
344 349anti-parallel
Strand 3
B
320 325anti-parallel
Strand 4
B
6 12parallel
Strand 5
B
276 282parallel
Strand 6
B
234 238parallel
Strand 7
B
252 254parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 129first strand
Strand 2
B
149 153parallel
Strand 3
B
158 164anti-parallel
Strand 4
B
193 202parallel
Strand 5
B
205 208anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 129first strand
Strand 2
B
149 153parallel
Strand 3
B
158 164anti-parallel
Strand 4
B
193 202parallel
Strand 5
B
214 216anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 76first strand
Strand 2
C
344 349anti-parallel
Strand 3
C
320 325anti-parallel
Strand 4
C
6 12parallel
Strand 5
C
276 282parallel
Strand 6
C
234 238parallel
Strand 7
C
252 254parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 129first strand
Strand 2
C
149 153parallel
Strand 3
C
158 164anti-parallel
Strand 4
C
193 202parallel
Strand 5
C
205 208anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 129first strand
Strand 2
C
149 153parallel
Strand 3
C
158 164anti-parallel
Strand 4
C
193 202parallel
Strand 5
C
214 216anti-parallel
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