Analysis of interatomic Contacts of Structural Units in PDB entry:
3M9W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3M9W entry

There is 1 chain in PDB entry 3M9W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3LEU 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3M9W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 31Right-handed alpha
Helix 2
2
A
43 57Right-handed alpha
Helix 3
3
A
72 81Right-handed alpha
Helix 4
4
A
105 121Right-handed alpha
Helix 5
5
A
135 155Right-handed alpha
Helix 6
6
A
167 169Right-handed 310
Helix 7
7
A
170 185Right-handed alpha
Helix 8
8
A
196 209Right-handed alpha
Helix 9
9
A
224 234Right-handed alpha
Helix 10
10
A
243 260Right-handed alpha
Helix 11
11
A
303 307Right-handed 310
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There are 3 sheets in PDB entry 3M9W. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 39first strand
Strand 2
A
4 9parallel
Strand 3
A
61 65parallel
Strand 4
A
85 89parallel
Strand 5
A
100 104parallel
Strand 6
A
276 282parallel
Strand 7
A
268 271anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 165first strand
Strand 2
A
124 130parallel
Strand 3
A
191 194parallel
Strand 4
A
217 218parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 241first strand
Strand 2
A
285 287anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il