Analysis of interatomic Contacts of Structural Units in PDB entry:
3MA8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MA8 entry

There are 2 chains in PDB entry 3MA8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 36PRO 534
B
 CYS 34PRO 534
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 3MA8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 42Right-handed alpha
Helix 2
2
A
45 51Right-handed alpha
Helix 3
3
A
61 65Right-handed 310
Helix 4
4
A
66 77Right-handed alpha
Helix 5
5
A
89 107Right-handed alpha
Helix 6
6
A
163 168Right-handed alpha
Helix 7
7
A
222 231Right-handed alpha
Helix 8
8
A
248 262Right-handed alpha
Helix 9
9
A
281 287Right-handed alpha
Helix 10
10
A
287 295Right-handed alpha
Helix 11
11
A
302 309Right-handed alpha
Helix 12
12
A
310 312Right-handed 310
Helix 13
13
A
313 329Right-handed alpha
Helix 14
14
A
339 344Right-handed 310
Helix 15
15
A
349 363Right-handed alpha
Helix 16
16
A
370 375Right-handed alpha
Helix 17
17
A
378 396Right-handed alpha
Helix 18
18
A
398 410Right-handed alpha
Helix 19
19
A
415 432Right-handed alpha
Helix 20
20
A
443 452Right-handed alpha
Helix 21
21
A
464 471Right-handed alpha
Helix 22
22
A
472 474Right-handed 310
Helix 23
23
A
487 502Right-handed alpha
Helix 24
24
B
37 42Right-handed alpha
Helix 25
25
B
45 51Right-handed alpha
Helix 26
26
B
61 65Right-handed 310
Helix 27
27
B
66 77Right-handed alpha
Helix 28
28
B
89 106Right-handed alpha
Helix 29
29
B
163 168Right-handed alpha
Helix 30
30
B
222 232Right-handed alpha
Helix 31
31
B
248 262Right-handed alpha
Helix 32
32
B
281 287Right-handed alpha
Helix 33
33
B
287 295Right-handed alpha
Helix 34
34
B
302 309Right-handed alpha
Helix 35
35
B
313 329Right-handed alpha
Helix 36
36
B
339 344Right-handed 310
Helix 37
37
B
349 363Right-handed alpha
Helix 38
38
B
370 375Right-handed alpha
Helix 39
39
B
378 395Right-handed alpha
Helix 40
40
B
398 410Right-handed alpha
Helix 41
41
B
415 432Right-handed alpha
Helix 42
42
B
443 452Right-handed alpha
Helix 43
43
B
464 471Right-handed alpha
Helix 44
44
B
472 474Right-handed 310
Helix 45
45
B
487 502Right-handed alpha
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There are 7 sheets in PDB entry 3MA8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
80 84parallel
Strand 3
A
113 117parallel
Strand 4
A
240 243parallel
Strand 5
A
274 279parallel
Strand 6
A
297 301parallel
Strand 7
A
332 335parallel
Strand 8
A
366 369parallel
Strand 9
A
55 59parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
144 145parallel
Strand 3
A
192 197anti-parallel
Strand 4
A
181 188anti-parallel
Strand 5
A
173 176anti-parallel
Strand 6
A
209 210anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
477 481first strand
Strand 2
A
457 462parallel
Strand 3
A
435 439parallel
Strand 4
A
510 515parallel
Strand 5
A
527 532anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 59first strand
Strand 2
B
80 84parallel
Strand 3
B
113 117parallel
Strand 4
B
240 243parallel
Strand 5
B
274 279parallel
Strand 6
B
297 301parallel
Strand 7
B
332 335parallel
Strand 8
B
366 369parallel
Strand 9
B
55 59parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
208 210anti-parallel
Strand 3
B
173 176anti-parallel
Strand 4
B
181 188anti-parallel
Strand 5
B
192 197anti-parallel
Strand 6
B
141 145anti-parallel
Strand 7
B
156 158parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 136first strand
Strand 2
B
201 203anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
477 481first strand
Strand 2
B
457 462parallel
Strand 3
B
435 439parallel
Strand 4
B
510 515parallel
Strand 5
B
527 532anti-parallel
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