Analysis of interatomic Contacts of Structural Units in PDB entry:
3MAE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MAE entry

There are 3 chains in PDB entry 3MAE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 183TYR 416
B
 THR 177TYR 416
C
 PRO 178TYR 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 3MAE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
192 209Right-handed alpha
Helix 2
2
A
220 239Right-handed alpha
Helix 3
3
A
243 259Right-handed alpha
Helix 4
4
A
296 300Right-handed 310
Helix 5
5
A
301 318Right-handed alpha
Helix 6
6
A
322 327Right-handed alpha
Helix 7
7
A
335 340Right-handed 310
Helix 8
8
A
390 407Right-handed alpha
Helix 9
9
B
192 209Right-handed alpha
Helix 10
10
B
220 239Right-handed alpha
Helix 11
11
B
243 259Right-handed alpha
Helix 12
12
B
260 262Right-handed 310
Helix 13
13
B
301 319Right-handed alpha
Helix 14
14
B
322 327Right-handed alpha
Helix 15
15
B
335 340Right-handed 310
Helix 16
16
B
390 407Right-handed alpha
Helix 17
17
C
192 209Right-handed alpha
Helix 18
18
C
220 239Right-handed alpha
Helix 19
19
C
243 259Right-handed alpha
Helix 20
20
C
260 262Right-handed 310
Helix 21
21
C
296 300Right-handed 310
Helix 22
22
C
301 318Right-handed alpha
Helix 23
23
C
322 327Right-handed alpha
Helix 24
24
C
335 340Right-handed 310
Helix 25
25
C
390 407Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3MAE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 190first strand
Strand 2
B
270 273anti-parallel
Strand 3
B
264 266anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 294first strand
Strand 2
A
279 281anti-parallel
Strand 3
A
331 334parallel
Strand 4
A
354 368parallel
Strand 5
A
371 385anti-parallel
Strand 6
A
211 219anti-parallel
Strand 7
C
343 345anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
270 273anti-parallel
Strand 3
C
187 190anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 345first strand
Strand 2
B
211 219anti-parallel
Strand 3
B
371 385anti-parallel
Strand 4
B
354 368anti-parallel
Strand 5
B
331 334parallel
Strand 6
B
279 281parallel
Strand 7
B
293 294anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 190first strand
Strand 2
C
270 273anti-parallel
Strand 3
C
264 267anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 285first strand
Strand 2
B
288 290anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 345first strand
Strand 2
C
211 219anti-parallel
Strand 3
C
371 385anti-parallel
Strand 4
C
354 368anti-parallel
Strand 5
C
331 334parallel
Strand 6
C
279 281parallel
Strand 7
C
293 294anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
283 284first strand
Strand 2
C
289 290anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il