Analysis of interatomic Contacts of Structural Units in PDB entry:
3MAF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MAF entry

There are 3 chains in PDB entry 3MAF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 58HIS 310
A
 TYR 312VAL 507
B
 PHE 64PRO 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 3MAF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 62Right-handed 310
Helix 2
2
A
76 97Right-handed alpha
Helix 3
3
A
108 122Right-handed alpha
Helix 4
4
A
133 151Right-handed alpha
Helix 5
5
A
167 188Right-handed alpha
Helix 6
6
A
202 212Right-handed alpha
Helix 7
7
A
227 235Right-handed alpha
Helix 8
8
A
256 267Right-handed alpha
Helix 9
9
A
281 287Right-handed alpha
Helix 10
10
A
326 334Right-handed alpha
Helix 11
11
A
355 395Right-handed alpha
Helix 12
12
A
416 427Right-handed alpha
Helix 13
13
A
445 449Right-handed 310
Helix 14
14
A
452 470Right-handed alpha
Helix 15
15
A
478 483Right-handed alpha
Helix 16
16
A
491 505Right-handed alpha
Helix 17
17
B
76 89Right-handed alpha
Helix 18
18
B
108 123Right-handed alpha
Helix 19
19
B
133 151Right-handed alpha
Helix 20
20
B
167 188Right-handed alpha
Helix 21
21
B
202 212Right-handed alpha
Helix 22
22
B
227 235Right-handed alpha
Helix 23
23
B
256 267Right-handed alpha
Helix 24
24
B
281 287Right-handed alpha
Helix 25
25
B
326 334Right-handed alpha
Helix 26
26
B
355 394Right-handed alpha
Helix 27
27
B
416 427Right-handed alpha
Helix 28
28
B
445 449Right-handed 310
Helix 29
29
B
452 470Right-handed alpha
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There are 6 sheets in PDB entry 3MAF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 165first strand
Strand 2
A
320 324anti-parallel
Strand 3
A
304 307anti-parallel
Strand 4
A
270 274parallel
Strand 5
A
239 245parallel
Strand 6
A
193 197parallel
Strand 7
A
214 218parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
345 347anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 400first strand
Strand 2
A
407 411anti-parallel
Strand 3
A
439 443anti-parallel
Strand 4
A
432 434anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 165first strand
Strand 2
B
320 324anti-parallel
Strand 3
B
304 307anti-parallel
Strand 4
B
270 275parallel
Strand 5
B
239 245parallel
Strand 6
B
193 197parallel
Strand 7
B
214 218parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 337first strand
Strand 2
B
345 347anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
399 400first strand
Strand 2
B
407 411anti-parallel
Strand 3
B
439 443anti-parallel
Strand 4
B
432 434anti-parallel
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